ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.28.1

Subclass Accession number: 4920
Subclass: 5.28.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 41.3 +/- 30.1
Average RMSD (Å) : 0.825 +/- 0.499

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	RXXXhhpAh
(φψ)-conformation:	aapplppaa

Pattern:	[DE]	[ER]	[QRT]	[ast]	[AL]	[CK]	[KN]	[CY]	[L]	[KY]	[EGN]	[AI]	[A]	[AR]	[GR]	[HIV]	[HKPS]	[gn]	[FL]	[NY]	[AE]	[DGP]	[EN]	[AL]	[ar]
Conservation:	1.780	0.488	-0.624	-1.395	-0.490	0.526	0.847	1.295	1.843	-0.143	-0.589	-0.465	1.843	0.219	-0.086	-0.903	-1.334	-1.076	0.280	0.217	-0.205	-0.881	0.847	-0.490	-1.504

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bwo_A_41	1bwo	A	43	67	DRQSACNCLKGIARGIHNLNEDNAR	HHHHHHHHHHHHHTT-TT--HHHHH	aaaaaaaaaaaaaaaxxlxbaaaaa
1fk5_A_43	1fk5	A	45	69	DRRAACNCLKNAAAGVSGLNAGNAA	HHHHHHHHHHHHHHT-TT--HHHHH	aaaaaaaaaaaaaaaxxvpbaaaaa
1n5u_A_131	1n5u	A	131	155	EETFLKKYLYEIARRHPYFYAPELL	HHHHHHHHHHHHHHHSTTS-HHHHH	aaaaaaaaaaaaaaabxvxpaaaaa
1rzl_*_41	1rzl	-	43	67	DRRTACNCLKNAARGIKGLNAGNAA	HHHHHHHHHHHHHHT-TT--HHHHH	aaaaaaaaaaaaaaaxxvxxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	D - 43
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	R - 44
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	Q - 45
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	A - 47
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	C - 48
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	L - 51
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	K - 52
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	I - 54
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	A - 55
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	G - 57
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	I - 58
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	H - 59
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	L - 61
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	E - 63
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	A - 66
1bwo_A_41	1bwo	A	LPC[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE	R - 67
1fk5_A_43	1fk5	A	OLAOLEIC ACID	D - 45
1fk5_A_43	1fk5	A	OLAOLEIC ACID	R - 46
1fk5_A_43	1fk5	A	OLAOLEIC ACID	R - 47
1fk5_A_43	1fk5	A	FMTFORMIC ACID	R - 47
1fk5_A_43	1fk5	A	OLAOLEIC ACID	A - 48
1fk5_A_43	1fk5	A	FMTFORMIC ACID	A - 48
1fk5_A_43	1fk5	A	OLAOLEIC ACID	A - 49
1fk5_A_43	1fk5	A	OLAOLEIC ACID	C - 50
1fk5_A_43	1fk5	A	FMTFORMIC ACID	C - 50
1fk5_A_43	1fk5	A	FMTFORMIC ACID	N - 51
1fk5_A_43	1fk5	A	OLAOLEIC ACID	L - 53
1fk5_A_43	1fk5	A	FMTFORMIC ACID	K - 54
1fk5_A_43	1fk5	A	OLAOLEIC ACID	A - 56
1fk5_A_43	1fk5	A	OLAOLEIC ACID	A - 57
1fk5_A_43	1fk5	A	OLAOLEIC ACID	V - 60
1fk5_A_43	1fk5	A	OLAOLEIC ACID	L - 63
1fk5_A_43	1fk5	A	OLAOLEIC ACID	A - 68
1fk5_A_43	1fk5	A	OLAOLEIC ACID	I - 71
1fk5_A_43	1fk5	A	OLAOLEIC ACID	P - 72
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 134
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 135
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 136
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 138
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 139
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 140
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 142
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 146
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 149
1n5u_A_131	1n5u	A	MYRMYRISTIC ACID	Y - 150
1n5u_A_131	1n5u	A	MYRMYRISTIC ACID	P - 152
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 153
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 154
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 155
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 156
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 157
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 158
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 159
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 161
1n5u_A_131	1n5u	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 165

Clusters included in this Subclass

CLUSTER: HH.6.162

CLUSTER: HH.7.109