Information on SUBCLASS 5.41.1 |
Subclass Accession number: 4933
Subclass: 5.41.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : - (>50 %) 1 (>50 %) 2 (>50 %) 3 (>50 %) GO : GO:0008415 (>50 %) GO:0016746 (>50 %) GO:0016747 (>50 %) SCOP : 53473 (>50 %) 53474 (>50 %) 53491 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 31.4 +/- 29.1 Average RMSD (Å) : 0.733 +/- 0.321 Consensus geometry
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Consensus Sequence: | cXXGGpcXX |
(φψ)-conformation: | aabglpbaa |
Pattern: | [IL] | [GP] | [EL] | [AI] | [GM] | [DGN] | [AD] | x | [G] | [G] | [RY] | [DKN] | x | [ANT] | [DST] | [MV] | [LW] |
Conservation: | 0.421 | -0.075 | -1.059 | -0.541 | -0.727 | -0.243 | -0.443 | -0.968 | 2.366 | 2.366 | -0.112 | -0.316 | -0.370 | -0.751 | -0.461 | 0.309 | 0.602 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dqz_A_158 | 1dqz | A | 162 | 178 | IGLAMNDSGGYNANSMW | HHHHHHHTTS--HHHHH | aaaaaaaxvvxbaaaaa |
1f0n_A_160 | 1f0n | A | 164 | 180 | IGLAMGDAGGYKAADMW | HHHHHHHTTS--HHHHH | aaaaaaabgvxbaaaaa |
1j1v_A_422 | 1j1v | A | 422 | 438 | LPEIGDAFGGRDHTTVL | HHHHHHHTTS--HHHHH | aaaaaaabvvxxaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f0n_A_160 | 1f0n | A | MPD2-METHYL-2,4-PENTANEDIOL | G - 160 |
1f0n_A_160 | 1f0n | A | MPD2-METHYL-2,4-PENTANEDIOL | L - 163 |
1f0n_A_160 | 1f0n | A | MPD2-METHYL-2,4-PENTANEDIOL | I - 164 |
1f0n_A_160 | 1f0n | A | MPD2-METHYL-2,4-PENTANEDIOL | G - 165 |
1f0n_A_160 | 1f0n | A | MPD2-METHYL-2,4-PENTANEDIOL | L - 166 |
1f0n_A_160 | 1f0n | A | MPD2-METHYL-2,4-PENTANEDIOL | A - 167 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | I - 425 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | G - 426 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | F - 429 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | R - 432 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | T - 436 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | V - 437 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | A - 440 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | C - 441 |
1j1v_A_422 | 1j1v | A | MSESELENOMETHIONINE | I - 444 |
Clusters included in this Subclass |
CLUSTER: HH.4.276 |