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Information on SUBCLASS 5.41.1
Subclass Accession number: 4933
Subclass: 5.41.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>50 %)  1 (>50 %)  2 (>50 %)  3 (>50 %)  
GO : GO:0008415 (>50 %)  GO:0016746 (>50 %)  GO:0016747 (>50 %)  
SCOP : 53473 (>50 %)  53474 (>50 %)  53491 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 31.4 +/- 29.1
Average RMSD (Å) : 0.733 +/- 0.321

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: cXXGGpcXX
(φψ)-conformation: aabglpbaa
Pattern: [IL][GP][EL][AI][GM][DGN][AD]x[G][G][RY][DKN]x[ANT][DST][MV][LW]
Conservation:0.421-0.075-1.059-0.541-0.727-0.243-0.443-0.9682.3662.366-0.112-0.316-0.370-0.751-0.4610.3090.602
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dqz_A_1581dqz   A162178IGLAMNDSGGYNANSMWHHHHHHHTTS--HHHHHaaaaaaaxvvxbaaaaa
1f0n_A_1601f0n   A164180IGLAMGDAGGYKAADMWHHHHHHHTTS--HHHHHaaaaaaabgvxbaaaaa
1j1v_A_4221j1v   A422438LPEIGDAFGGRDHTTVLHHHHHHHTTS--HHHHHaaaaaaabvvxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0n_A_1601f0n   A     MPD2-METHYL-2,4-PENTANEDIOL G - 160
1f0n_A_1601f0n   A     MPD2-METHYL-2,4-PENTANEDIOL L - 163
1f0n_A_1601f0n   A     MPD2-METHYL-2,4-PENTANEDIOL I - 164
1f0n_A_1601f0n   A     MPD2-METHYL-2,4-PENTANEDIOL G - 165
1f0n_A_1601f0n   A     MPD2-METHYL-2,4-PENTANEDIOL L - 166
1f0n_A_1601f0n   A     MPD2-METHYL-2,4-PENTANEDIOL A - 167
1j1v_A_4221j1v   A     MSESELENOMETHIONINE I - 425
1j1v_A_4221j1v   A     MSESELENOMETHIONINE G - 426
1j1v_A_4221j1v   A     MSESELENOMETHIONINE F - 429
1j1v_A_4221j1v   A     MSESELENOMETHIONINE R - 432
1j1v_A_4221j1v   A     MSESELENOMETHIONINE T - 436
1j1v_A_4221j1v   A     MSESELENOMETHIONINE V - 437
1j1v_A_4221j1v   A     MSESELENOMETHIONINE A - 440
1j1v_A_4221j1v   A     MSESELENOMETHIONINE C - 441
1j1v_A_4221j1v   A     MSESELENOMETHIONINE I - 444

Clusters included in this Subclass
CLUSTER: HH.4.276