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Information on SUBCLASS 5.44.1
Subclass Accession number: 4936
Subclass: 5.44.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 2

Average sequence ID (%) : 10.3 +/- 0.0
Average RMSD (Å) : 1.200 +/- 0.000

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: cchGXppPp
(φψ)-conformation: aapgpapaa
Pattern: [LP][EG][QT]x[QY][FL][L]x[DK][GN][MY][G]x[KS][DE][P][DE][AK][KV][AK][FK][VY][AK]x[LT][TY][EL][AV][PV]
Conservation:-0.729-0.382-0.209-0.7290.1370.1371.177-0.729-0.0360.4840.1372.563-1.075-0.0361.0043.2561.004-0.382-0.729-0.382-0.729-0.036-0.382-1.075-0.382-0.209-1.075-0.209-0.382
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c8s_A_101c8s   A2250LGTLYFLVKGMGVSDPDAKKFYAITTLVPHHHHHHHHHHTT--SHHHHHHHHHHHHHHaaaaaaaaaaxgpapaaaaaaaaaaaaaa
1uby_*_2941uby   -294322PEQRQLLEDNYGRKEPEKVAKVKELYEAVHHHHHHHHHHTT---HHHHHHHHHHHHHHaaaaaaaaaaxvbabaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL W - 10
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL A - 14
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 15
1c8s_A_101c8s   A     SQU2,10,23-TRIMETHYL-TETRACOSANE L - 15
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL T - 17
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL A - 18
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 19
1c8s_A_101c8s   A     SQU2,10,23-TRIMETHYL-TETRACOSANE L - 19
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL M - 20
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL G - 21
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 22
1c8s_A_101c8s   A     SQU2,10,23-TRIMETHYL-TETRACOSANE L - 22
1c8s_A_101c8s   A     SQU2,10,23-TRIMETHYL-TETRACOSANE G - 23
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL T - 24
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 25
1c8s_A_101c8s   A     SQU2,10,23-TRIMETHYL-TETRACOSANE Y - 26
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 28
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL K - 40
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL Y - 43
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL A - 44
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL I - 45
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL T - 47
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 48
1c8s_A_101c8s   A     RETRETINAL V - 49
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL P - 50
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL A - 51
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL I - 52
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL F - 54
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL T - 55
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL M - 56
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 58
1c8s_A_101c8s   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 61

Clusters included in this Subclass
CLUSTER: HH.4.320