ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.12.1

Subclass Accession number: 4953
Subclass: 6.12.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 24.7 +/- 24.6
Average RMSD (Å) : 0.633 +/- 0.231

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXcLXXhXXX
(φψ)-conformation:	aalpppppaa

Pattern:	[LP]	x	[KR]	[LM]	[EF]	[KNQ]	[EMY]	[AGV]	[DK]	[D]	[FV]	[FV]	[KT]	[AS]	[KLM]	[GN]	[L]	[ALT]	x	[LPV]	[PT]	[PQS]	[DEG]	[AF]	[FW]	[DNS]	[KN]
Conservation:	-0.361	-1.648	0.995	0.818	-0.502	-0.165	-1.023	-0.945	0.172	2.644	0.060	0.060	-0.081	0.228	-0.633	0.751	1.239	-0.867	-1.413	-1.023	0.425	-0.633	-0.399	-0.277	2.223	-0.009	0.369

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1j37_A_296	1j37	A	296	322	PLKMFQMGDDFFTSMNLTKLPQDFWDK	HHHHHHHHHHHHHHTT-----HHHHHH	aaaaaaaaaaaaaaavxxxxxaaaaaa
1knv_A_43	1knv	A	47	73	LDKLENYVKDVVKAKGLAIPTSGAFSN	HHHHHHHHHHHHHHHT-----HHHHHH	aaaaaaaaaaaaaaavbxxxpaaaaaa
1o8a_A_312	1o8a	A	312	338	PRRMFKEADDFFTSLGLLPVPPEFWNK	HHHHHHHHHHHHHHTT-----HHHHHH	aaaaaaaaaaaaaaavxxwxxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1o8a_A_312	1o8a	A	NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE	R - 313
1o8a_A_312	1o8a	A	NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE	P - 333
1o8a_A_312	1o8a	A	NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE	W - 336
1o8a_A_312	1o8a	A	NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE	N - 337
1o8a_A_312	1o8a	A	NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE	K - 338

Clusters included in this Subclass