ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.41.1

Subclass Accession number: 4984
Subclass: 6.41.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
SCOP : 47412 (>50 %) 47413 (>50 %)

Number of loops: 3

Average sequence ID (%) : 14.3 +/- 19.5
Average RMSD (Å) : 1.033 +/- 0.306

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	hXcXXXhXXp
(φψ)-conformation:	aalabppbaa

Pattern:	[GPT]	[AE]	[AIL]	[FLM]	x	[GN]	x	x	x	[LY]	[NP]	[AQ]	[DTY]	[ANV]	[AD]	x	[LW]	x	[AGV]	[AGK]	[CIK]
Conservation:	-0.598	0.571	-0.030	0.962	-0.313	2.353	-1.165	-0.030	0.502	0.922	1.532	0.571	-0.882	-1.165	0.151	-1.307	1.029	-0.882	-0.598	-0.456	-1.165

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dw9_A_40	1dw9	A	44	64	TAALLGQQALPADAARLVGAK	HHHHTTSS---HHHHHHHHHH	aaaaavabbxxaaaaaaaaaa
1r3c_A_191	1r3c	A	191	211	PEIMLNWMHYNQTVDIWSVGC	HHHHTT-S---THHHHHHHHH	aaaaalabxxbaaaaaaaaaa
1rio_A_45	1rio	A	49	69	GALFNGINALNAYNAALLAKI	HHHHHTSS---HHHHHHHHHH	aaaaavabxxbaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dw9_A_40	1dw9	A	MSESELENOMETHIONINE	Q - 51
1dw9_A_40	1dw9	A	MSESELENOMETHIONINE	A - 52
1dw9_A_40	1dw9	A	MSESELENOMETHIONINE	L - 53
1rio_A_45	1rio	A	MSESELENOMETHIONINE	Q - 45
1rio_A_45	1rio	A	CACALCIUM ION	Q - 45
1rio_A_45	1rio	A	MSESELENOMETHIONINE	S - 46
1rio_A_45	1rio	A	MSESELENOMETHIONINE	G - 47
1rio_A_45	1rio	A	MSESELENOMETHIONINE	V - 48
1rio_A_45	1rio	A	MSESELENOMETHIONINE	L - 51
1rio_A_45	1rio	A	MSESELENOMETHIONINE	A - 60
1rio_A_45	1rio	A	CACALCIUM ION	A - 60
1rio_A_45	1rio	A	MSESELENOMETHIONINE	Y - 61
1rio_A_45	1rio	A	MSESELENOMETHIONINE	N - 62
1rio_A_45	1rio	A	MSESELENOMETHIONINE	A - 63
1rio_A_45	1rio	A	MSESELENOMETHIONINE	A - 64
1rio_A_45	1rio	A	CACALCIUM ION	A - 64
1rio_A_45	1rio	A	MSESELENOMETHIONINE	L - 65
1rio_A_45	1rio	A	CACALCIUM ION	L - 65
1rio_A_45	1rio	A	MSESELENOMETHIONINE	L - 66
1rio_A_45	1rio	A	MSESELENOMETHIONINE	K - 68
1rio_A_45	1rio	A	CACALCIUM ION	K - 68
1rio_A_45	1rio	A	MSESELENOMETHIONINE	I - 69
1rio_A_45	1rio	A	CACALCIUM ION	I - 69

Clusters included in this Subclass

CLUSTER: HH.7.196