Logo
Information on SUBCLASS 0.1.5
Subclass Accession number: 5
Subclass: 0.1.5 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 7.3 +/- 11.4
Average RMSD (Å) : 0.417 +/- 0.189

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXhX
(φψ)-conformation: aabb
Pattern: [acfilvy]x[adeknqrst]x[acfgilmvy]xx
Conservation:0.372-0.7221.054-1.2900.557-1.0481.076
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_3291a8i   -329335FPDKVAIHHHHEEEaaaabbb
1cjx_A_1361cjx   A137143YDIDFVYHHHHEEEaaaabbx
1eke_A_461eke   A5662LENLGYVHHHHSEEaaaabbb
1ez0_A_4161ez0   A426432LEEIAGRHHTTEEEaaaabab
1f8r_A_4051f8r   A408414IQSFCYPHHHHEEEaaaabbx
1g61_A_21071g61   A21072113LGNLILTHHHHEEEaaaabbb
1g62_A_131g62   A1319IGVFSKLHHHHEEEaaaabbb
1g62_A_1931g62   A193199VGAGMVVHHHHEEEaaaabbb
1h5z_A_3971h5z   A411417LLREYEFHHHHEEEaaaabbb
1iar_B_291iar   B2935CSTELRLHHHHEEEaaaabbb
1kyf_A_7601kyf   A762768LQTNLNLHHHHEEEaaaabbb
1l2t_A_741l2t   A8187RRDKIGFHHHHEEEaaaabbb
1l6p_A_141l6p   A1420ADQAFAFHHHHEEEaaaabxx
1mnn_A_2101mnn   A217223DSTFYLHHHHHEEEaaaabbx
1n7o_A_8831n7o   A883888DQEVFK.HHHHEE.aaaabb.
1po5_A_4391po5   A453459ILQNFSIHHHHEEEaaaabxb
1s5a_A_641s5a   A6470YPKQIHLHHHHEEEaaaabbx
2dpm_A_1562dpm   A165171YINNNQLHHHHSEEaaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eke_A_461eke   A     MSESELENOMETHIONINE R - 65
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 397
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 399
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 400
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 401
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 403
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 404
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 439
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 441
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 442
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 445
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 446
1s5a_A_641s5a   A     MSESELENOMETHIONINE Y - 64
1s5a_A_641s5a   A     ACTACETATE ION Y - 64
1s5a_A_641s5a   A     GOLGLYCEROL Y - 64
1s5a_A_641s5a   A     MSESELENOMETHIONINE P - 65
1s5a_A_641s5a   A     ACTACETATE ION I - 68
1s5a_A_641s5a   A     MSESELENOMETHIONINE L - 70
1s5a_A_641s5a   A     ACTACETATE ION L - 70
1s5a_A_641s5a   A     GOLGLYCEROL L - 70
1s5a_A_641s5a   A     MSESELENOMETHIONINE F - 73
1s5a_A_641s5a   A     GOLGLYCEROL F - 73

Clusters included in this Subclass
CLUSTER: HE.0.5
CLUSTER: HE.1.8