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Information on SUBCLASS 7.2.1
Subclass Accession number: 5005
Subclass: 7.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 18.7 +/- 17.9
Average RMSD (Å) : 0.744 +/- 0.500

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hhcXXpXhcXp
(φψ)-conformation: aalaaaabpaa
Pattern: x[astv][FHLWY][cqsw][ACGKV][AGLTV][agqst][afgiltv][LMT]x[AILM][filmy][DGKS][gkqrs][filt][DHQR]x[ilmvy][DN]x[DEKR][deksy][ailmv]xx[AFWY]
Conservation:-0.5170.0041.142-0.067-0.681-0.444-0.555-0.9481.314-1.0490.8890.1500.118-0.684-0.2390.829-1.2000.3122.783-1.3531.078-0.627-0.067-0.957-0.8011.569
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dce_B_1431dce   B145170FSFCAVATLALLGKLDAINVEKAIEFHHHHHHHHHHHHT-GGGS-HHHHHHHaaaaaaaaaaaavaaaabxaaaaaaa
1dce_B_1911dce   B193218QIYCCTGFLAITSQLHQVNSDLLGWWHHHHHHHHHHHTT-GGGS-HHHHHHHaaaaaaaaaaaalaaaaxxaaaaaaa
1dce_B_2391dce   B241266YSWWVLASLKIIGRLHWIDREKLRSFHHHHHHHHHHHHT-GGGS-HHHHHHHaaaaaaaaaaaavaaaaxxaaaaaaa
1dce_B_461dce   B4974GVYWGLTVMDLMGQLHRMNKEEILVFHHHHHHHHHHHTT-GGGS-HHHHHHHaaaaaaaaaaaavaaaabxaaaaaaa
1dce_B_951dce   B97122YTLSAVQILTLYDSIHVINVDKVVAYHHHHHHHHHHHTT-GGGS-HHHHHHHaaaaaaaaaaaalaaaabxaaaaaaa
1ld8_B_7491ld8   B751776YTFCGLAALVILKRERSLNLKSLLQWHHHHHHHHHHHHT-GGGS-HHHHHHHaaaaaaaaaaaavaaaabxaaaaaaa
1n4q_B_2721n4q   B272297YSFWVGATLKLLKIFQYTNFEKNRNYHHHHHHHHHHHTT-GGGS-HHHHHHHaaaaaaaaaaaavaaaaxxaaaaaaa
1n4q_B_471n4q   B5075IAFFALSGLDMLDSLDVVNKDDIIEWHHHHHHHHHHHTT-GGGS-HHHHHHHaaaaaaaaaaaalaaaabxaaaaaaa
1rtx_A_401rtx   A4469RAHQKAFLTYAFGGTDKYDGRYMREAHHHHHHHHHHHHT-GGGS-HHHHHHHaaaaaaaaaaaagaaaabpaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dce_B_461dce   B     FMEN-FORMYLMETHIONINE W - 52
1dce_B_2391dce   B     ZNZINC ION V - 239
1dce_B_2391dce   B     ZNZINC ION C - 240
1dce_B_2391dce   B     ZNZINC ION Y - 241
1dce_B_2391dce   B     ZNZINC ION W - 244
1ld8_B_7491ld8   B     FPPFARNESYL DIPHOSPHATE G - 749
1ld8_B_7491ld8   B     FPPFARNESYL DIPHOSPHATE G - 750
1ld8_B_7491ld8   B     FPPFARNESYL DIPHOSPHATE Y - 751
1ld8_B_7491ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE Y - 751
1ld8_B_7491ld8   B     FPPFARNESYL DIPHOSPHATE C - 754
1ld8_B_7491ld8   B     SUCSUCROSE S - 767
1ld8_B_7491ld8   B     SUCSUCROSE L - 768
1ld8_B_7491ld8   B     SUCSUCROSE N - 769
1ld8_B_7491ld8   B     SUCSUCROSE S - 772
1ld8_B_7491ld8   B     SUCSUCROSE L - 773
1n4q_B_471n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE T - 49
1n4q_B_471n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE F - 52
1n4q_B_471n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE F - 53
1n4q_B_2721n4q   B     ZNZINC ION Y - 272
1n4q_B_2721n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE Y - 272
1n4q_B_2721n4q   B     ZNZINC ION W - 275
1n4q_B_2721n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE W - 275
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 42
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 46
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 49
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 50
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 51
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 53
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 54
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 60
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 61
1rtx_A_401rtx   A     CDCADMIUM ION G - 63
1rtx_A_401rtx   A     CDCADMIUM ION R - 64
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 65
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 66
1rtx_A_401rtx   A     CDCADMIUM ION R - 67
1rtx_A_401rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 69

Clusters included in this Subclass
CLUSTER: HH.7.15