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PDB code:

Information on SUBCLASS 7.2.1

Subclass Accession number: 5005 Subclass: 7.2.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 9 Average sequence ID (%) : 18.7 +/- 17.9 Average RMSD (Å) : 0.744 +/- 0.500 Consensus geometry d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dce_B_143	1dce	B	145	170	FSFCAVATLALLGKLDAINVEKAIEF	HHHHHHHHHHHHT-GGGS-HHHHHHH	aaaaaaaaaaaavaaaabxaaaaaaa
1dce_B_191	1dce	B	193	218	QIYCCTGFLAITSQLHQVNSDLLGWW	HHHHHHHHHHHTT-GGGS-HHHHHHH	aaaaaaaaaaaalaaaaxxaaaaaaa
1dce_B_239	1dce	B	241	266	YSWWVLASLKIIGRLHWIDREKLRSF	HHHHHHHHHHHHT-GGGS-HHHHHHH	aaaaaaaaaaaavaaaaxxaaaaaaa
1dce_B_46	1dce	B	49	74	GVYWGLTVMDLMGQLHRMNKEEILVF	HHHHHHHHHHHTT-GGGS-HHHHHHH	aaaaaaaaaaaavaaaabxaaaaaaa
1dce_B_95	1dce	B	97	122	YTLSAVQILTLYDSIHVINVDKVVAY	HHHHHHHHHHHTT-GGGS-HHHHHHH	aaaaaaaaaaaalaaaabxaaaaaaa
1ld8_B_749	1ld8	B	751	776	YTFCGLAALVILKRERSLNLKSLLQW	HHHHHHHHHHHHT-GGGS-HHHHHHH	aaaaaaaaaaaavaaaabxaaaaaaa
1n4q_B_272	1n4q	B	272	297	YSFWVGATLKLLKIFQYTNFEKNRNY	HHHHHHHHHHHTT-GGGS-HHHHHHH	aaaaaaaaaaaavaaaaxxaaaaaaa
1n4q_B_47	1n4q	B	50	75	IAFFALSGLDMLDSLDVVNKDDIIEW	HHHHHHHHHHHTT-GGGS-HHHHHHH	aaaaaaaaaaaalaaaabxaaaaaaa
1rtx_A_40	1rtx	A	44	69	RAHQKAFLTYAFGGTDKYDGRYMREA	HHHHHHHHHHHHT-GGGS-HHHHHHH	aaaaaaaaaaaagaaaabpaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dce_B_46	1dce	B	FMEN-FORMYLMETHIONINE	W - 52
1dce_B_239	1dce	B	ZNZINC ION	V - 239
1dce_B_239	1dce	B	ZNZINC ION	C - 240
1dce_B_239	1dce	B	ZNZINC ION	Y - 241
1dce_B_239	1dce	B	ZNZINC ION	W - 244
1ld8_B_749	1ld8	B	FPPFARNESYL DIPHOSPHATE	G - 749
1ld8_B_749	1ld8	B	FPPFARNESYL DIPHOSPHATE	G - 750
1ld8_B_749	1ld8	B	FPPFARNESYL DIPHOSPHATE	Y - 751
1ld8_B_749	1ld8	B	U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE	Y - 751
1ld8_B_749	1ld8	B	FPPFARNESYL DIPHOSPHATE	C - 754
1ld8_B_749	1ld8	B	SUCSUCROSE	S - 767
1ld8_B_749	1ld8	B	SUCSUCROSE	L - 768
1ld8_B_749	1ld8	B	SUCSUCROSE	N - 769
1ld8_B_749	1ld8	B	SUCSUCROSE	S - 772
1ld8_B_749	1ld8	B	SUCSUCROSE	L - 773
1n4q_B_47	1n4q	B	MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE	T - 49
1n4q_B_47	1n4q	B	MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE	F - 52
1n4q_B_47	1n4q	B	MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE	F - 53
1n4q_B_272	1n4q	B	ZNZINC ION	Y - 272
1n4q_B_272	1n4q	B	MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE	Y - 272
1n4q_B_272	1n4q	B	ZNZINC ION	W - 275
1n4q_B_272	1n4q	B	MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE	W - 275
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 42
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 46
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 49
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 50
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 51
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 53
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 54
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 60
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 61
1rtx_A_40	1rtx	A	CDCADMIUM ION	G - 63
1rtx_A_40	1rtx	A	CDCADMIUM ION	R - 64
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 65
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 66
1rtx_A_40	1rtx	A	CDCADMIUM ION	R - 67
1rtx_A_40	1rtx	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 69

Clusters included in this Subclass

CLUSTER: HH.7.15

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