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Information on SUBCLASS 8.1.2
Subclass Accession number: 5029
Subclass: 8.1.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003700 (>75 %)  GO:0003707 (>75 %)  GO:0004872 (>75 %)  GO:0004879 (>75 %)  GO:0005496 (>50 %)  
SCOP : 48507 (>75 %)  48508 (>75 %)  48509 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 44.4 +/- 15.9
Average RMSD (Å) : 0.400 +/- 0.000

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pXhPGFXcLXXX
(φψ)-conformation: aappgaaappaa
Pattern: x[IV]x[GK][W][AS][EK][AKS][IL][P][G][F][AR][DN][L][HP][IKV][AD][D][Q]x[ALT][LV][FI][EQ][SY][AS][FW][LM][EGS][L][FM][V][FL][AGR][LM][AG][WY][R]
Conservation:-1.3370.110-1.196-0.7243.650-0.313-0.117-0.865-0.1231.7601.2881.288-0.6750.1230.343-0.190-1.075-0.7601.2880.815-1.284-1.075-0.316-0.4050.116-0.613-0.3560.8590.024-0.9700.343-0.2580.343-0.295-1.075-0.033-0.2951.1840.815
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a28_A_7111a28   A728766SVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRHHHHHHHHSTTGGGS-HHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaxpgaaaxpaaaaaaaaaaaaaaaaaaaaaaa
1gs4_A_6971gs4   A714752HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRHHHHHHHTSTTGGGS-HHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaxpvaaaxpaaaaaaaaaaaaaaaaaaaaaaa
1ovl_E_4161ovl   E416454IIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRHHHHHHHTSTTSTTS-HHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaxpvaaaxpaaaaaaaaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a28_A_7111a28   A     STRPROGESTERONE L - 715
1a28_A_7111a28   A     STRPROGESTERONE T - 716
1a28_A_7111a28   A     STRPROGESTERONE L - 718
1a28_A_7111a28   A     STRPROGESTERONE N - 719
1a28_A_7111a28   A     STRPROGESTERONE L - 721
1a28_A_7111a28   A     STRPROGESTERONE G - 722
1a28_A_7111a28   A     STRPROGESTERONE Q - 725
1a28_A_7111a28   A     STRPROGESTERONE W - 755
1a28_A_7111a28   A     STRPROGESTERONE M - 756
1a28_A_7111a28   A     STRPROGESTERONE M - 759
1a28_A_7111a28   A     STRPROGESTERONE V - 760
1a28_A_7111a28   A     STRPROGESTERONE G - 762
1a28_A_7111a28   A     STRPROGESTERONE L - 763
1a28_A_7111a28   A     STRPROGESTERONE R - 766
1gs4_A_6971gs4   A     PO4PHOSPHATE ION F - 697
1gs4_A_6971gs4   A     PO4PHOSPHATE ION A - 698
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL L - 700
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL H - 701
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL S - 702
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL L - 704
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL N - 705
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL L - 707
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL G - 708
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL Q - 711
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL W - 741
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL M - 742
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL M - 745
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL V - 746
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL M - 749
1gs4_A_6971gs4   A     ZK59ALPHA-FLUOROCORTISOL R - 752
1ovl_E_4161ovl   E     MSESELENOMETHIONINE I - 416
1ovl_E_4161ovl   E     MSESELENOMETHIONINE I - 417
1ovl_E_4161ovl   E     MSESELENOMETHIONINE R - 418
1ovl_E_4161ovl   E     MSESELENOMETHIONINE G - 419
1ovl_E_4161ovl   E     MSESELENOMETHIONINE W - 420
1ovl_E_4161ovl   E     MSESELENOMETHIONINE A - 421
1ovl_E_4161ovl   E     MSESELENOMETHIONINE E - 422
1ovl_E_4161ovl   E     MSESELENOMETHIONINE I - 424
1ovl_E_4161ovl   E     MSESELENOMETHIONINE F - 427
1ovl_E_4161ovl   E     MSESELENOMETHIONINE Q - 435
1ovl_E_4161ovl   E     MSESELENOMETHIONINE L - 438
1ovl_E_4161ovl   E     MSESELENOMETHIONINE F - 439
1ovl_E_4161ovl   E     MSESELENOMETHIONINE A - 442
1ovl_E_4161ovl   E     MSESELENOMETHIONINE F - 443
1ovl_E_4161ovl   E     MSESELENOMETHIONINE L - 446
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs4_A_6971gs4   A AC2PO4 BINDING SITE FOR CHAIN AF - 697
1gs4_A_6971gs4   A AC1ZK5 BINDING SITE FOR CHAIN AH - 701
1gs4_A_6971gs4   A AC1ZK5 BINDING SITE FOR CHAIN AL - 704
1gs4_A_6971gs4   A AC1ZK5 BINDING SITE FOR CHAIN AQ - 711
1gs4_A_6971gs4   A AC1ZK5 BINDING SITE FOR CHAIN AR - 752

Clusters included in this Subclass
CLUSTER: HH.9.70