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Information on SUBCLASS 8.6.2
Subclass Accession number: 5035
Subclass: 8.6.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005509 (>75 %)  
SCOP : 47472 (>75 %)  47473 (>75 %)  47492 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 56.3 +/- -2.0
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: pFXXDhRXLTpX
(φψ)-conformation: aabaapppppaa
Pattern: [DE][E][L][K][FLY][FV][L][KQ][KNS][F][AKQ][AS][D][AG][R][ADE][L][T][DE][AGS][E][T][K][AST][FL][LM][DK][A][AG]
Conservation:0.2601.0480.3361.048-0.850-0.8950.336-0.331-1.1671.760-1.562-0.7031.760-0.8021.048-1.4830.3361.0480.250-1.2461.0481.0481.048-1.167-0.567-0.232-0.9060.336-0.803
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cdp_*_601cdp   -6189DELKLFLQNFKADARALTDGETKTFLKAGHHHHTGGGGTSTT-----HHHHHHHHHHHaaaaaaaaaabaaxxxxxaaaaaaaaaaa
1pva_A_601pva   A6189EELKFVLKSFAADGRDLTDAETKAFLKAAHHHHTGGGGT-TT-----HHHHHHHHHHHaaaaaaaaaabaapxxxxaaaaaaaaaaa
1rro_*_611rro   -6189DELKYFLQKFQSDARELTESETKSLMDAAHHHHTGGGGT-TTS----HHHHHHHHHHHaaaaaaaaaabaaxxxxxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cdp_*_601cdp   *     CDCADMIUM ION E - 62
1cdp_*_601cdp   *     CDCADMIUM ION G - 89
1pva_A_601pva   A     CACALCIUM ION E - 62
1pva_A_601pva   A     CACALCIUM ION A - 89
1rro_*_611rro   *     CACALCIUM ION Q - 71
1rro_*_611rro   *     CACALCIUM ION D - 73
1rro_*_611rro   *     CACALCIUM ION A - 74
1rro_*_611rro   *     CACALCIUM ION M - 86

Clusters included in this Subclass
CLUSTER: HH.13.30