Information on SUBCLASS 8.6.2 |
Subclass Accession number: 5035
Subclass: 8.6.2 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005509 (>75 %) SCOP : 47472 (>75 %) 47473 (>75 %) 47492 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 56.3 +/- -2.0 Average RMSD (Å) : 0.200 +/- 0.000 Consensus geometry
|
Consensus Sequence: | pFXXDhRXLTpX |
(φψ)-conformation: | aabaapppppaa |
Pattern: | [DE] | [E] | [L] | [K] | [FLY] | [FV] | [L] | [KQ] | [KNS] | [F] | [AKQ] | [AS] | [D] | [AG] | [R] | [ADE] | [L] | [T] | [DE] | [AGS] | [E] | [T] | [K] | [AST] | [FL] | [LM] | [DK] | [A] | [AG] |
Conservation: | 0.260 | 1.048 | 0.336 | 1.048 | -0.850 | -0.895 | 0.336 | -0.331 | -1.167 | 1.760 | -1.562 | -0.703 | 1.760 | -0.802 | 1.048 | -1.483 | 0.336 | 1.048 | 0.250 | -1.246 | 1.048 | 1.048 | 1.048 | -1.167 | -0.567 | -0.232 | -0.906 | 0.336 | -0.803 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cdp_*_60 | 1cdp | - | 61 | 89 | DELKLFLQNFKADARALTDGETKTFLKAG | HHHHTGGGGTSTT-----HHHHHHHHHHH | aaaaaaaaaabaaxxxxxaaaaaaaaaaa |
1pva_A_60 | 1pva | A | 61 | 89 | EELKFVLKSFAADGRDLTDAETKAFLKAA | HHHHTGGGGT-TT-----HHHHHHHHHHH | aaaaaaaaaabaapxxxxaaaaaaaaaaa |
1rro_*_61 | 1rro | - | 61 | 89 | DELKYFLQKFQSDARELTESETKSLMDAA | HHHHTGGGGT-TTS----HHHHHHHHHHH | aaaaaaaaaabaaxxxxxaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cdp_*_60 | 1cdp | * | CDCADMIUM ION | E - 62 |
1cdp_*_60 | 1cdp | * | CDCADMIUM ION | G - 89 |
1pva_A_60 | 1pva | A | CACALCIUM ION | E - 62 |
1pva_A_60 | 1pva | A | CACALCIUM ION | A - 89 |
1rro_*_61 | 1rro | * | CACALCIUM ION | Q - 71 |
1rro_*_61 | 1rro | * | CACALCIUM ION | D - 73 |
1rro_*_61 | 1rro | * | CACALCIUM ION | A - 74 |
1rro_*_61 | 1rro | * | CACALCIUM ION | M - 86 |
Clusters included in this Subclass |
CLUSTER: HH.13.30 |