ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.7.1

Subclass Accession number: 5036
Subclass: 8.7.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 29.2 +/- 30.5
Average RMSD (Å) : 1.057 +/- 0.399

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	XXGXXhpphpXp
(φψ)-conformation:	aagbpaaappaa

Pattern:	[EGNPS]	[FKMQY]	[aim]	[av]	[EHR]	[ALW]	[almy]	[aef]	[at]	[kr]	[GV]	[IKL]	[ADPT]	[filp]	[AEN]	[knst]	[ALV]	[GQST]	x	[der]	[DQ]	[kl]	[KQY]
Conservation:	-0.482	-0.504	-0.776	-0.220	1.307	0.133	-0.683	-0.572	0.084	-0.493	1.706	-0.277	-0.238	-1.450	0.833	-0.485	0.501	0.003	-1.231	-0.371	2.958	-0.689	0.945

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a0p_*_23	1a0p	-	34	56	SMMVEWLHHRGLTLATAQSDDLQ	HHHHHHHHHTS--TTT--HHHHH	aaaaaaaaaagpbaaapbaaaaa
1a8i_*_21	1a8i	-	30	52	NFNRHLHFTLVKDRNVATPRDYY	HHHHHHHHTT---TTT--HHHHH	aaaaaaaaaavbbaaaxxaaaaa
1gu6_A_183	1gu6	A	183	205	PYAARAMEAIGKPFEKAGRFDQQ	HHHHHHHHHTT--GGGS-HHHHH	aaaaaaaaaavbpaaaxxaaaaa
1hy0_A_384	1hy0	A	392	414	GKAVHLAETKGIAINNLTLEDLK	HHHHHHHHHHTS-TTTS-HHHHH	aaaaaaaaaavbxaaapxaaaaa
1i0a_A_384	1i0a	A	392	414	GKAVHLAETKGITINNLTLEDLK	HHHHHHHHHTTS-GGG--HHHHH	aaaaaaaaaalbxaaabpaaaaa
1k7w_A_386	1k7w	A	394	416	GKAVHLAETKGITINKLSLEDLK	HHHHHHHHTTT--GGG--HHHHH	aaaaaaaaaavbxaaaxxaaaaa
1omh_A_234	1omh	A	237	259	EQIAEWYAARGLDPNSVSLEQKQ	HHHHHHHHHHT--TTT--HHHHH	aaaaaaaaaavxxaaapxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gu6_A_183	1gu6	A	CACALCIUM ION	Y - 184
1gu6_A_183	1gu6	A	HECHEME C	Y - 184
1gu6_A_183	1gu6	A	CACALCIUM ION	R - 201
1gu6_A_183	1gu6	A	HECHEME C	R - 201
1gu6_A_183	1gu6	A	CACALCIUM ION	Q - 205
1gu6_A_183	1gu6	A	HECHEME C	Q - 205
1gu6_A_183	1gu6	A	CACALCIUM ION	S - 206
1gu6_A_183	1gu6	A	HECHEME C	S - 206
1gu6_A_183	1gu6	A	CACALCIUM ION	V - 208
1gu6_A_183	1gu6	A	HECHEME C	V - 208
1gu6_A_183	1gu6	A	CACALCIUM ION	C - 209
1gu6_A_183	1gu6	A	HECHEME C	C - 209

Clusters included in this Subclass

CLUSTER: HH.10.26

CLUSTER: HH.8.126

CLUSTER: HH.9.19