Information on SUBCLASS 8.10.1 |
Subclass Accession number: 5039
Subclass: 8.10.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 45.8 +/- 29.0 Average RMSD (Å) : 0.680 +/- 0.277 Consensus geometry
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Consensus Sequence: | pXXpGXhphphp |
(φψ)-conformation: | aalagbbbbpaa |
Pattern: | [F] | [D] | [DN] | [FY] | [I] | [AQS] | [CG] | [CL] | [IV] | [kr] | [L] | [DQR] | [AR] | [LM] | [FT] | [DR] | [as] | [F] | [KR] | [RS] | x | [D] | [KST] | [ADN] | [GQ] | [DQT] | [G] | x | [IV] | [NQ] | [FV] | [NPS] | [IY] | [DEQ] | [DEQ] | [FWY] | [IL] | [QS] | [CLM] | [TV] |
Conservation: | 1.999 | 1.999 | 0.472 | 1.185 | 0.718 | -0.917 | 0.194 | 0.371 | 0.427 | -1.239 | 0.718 | -0.859 | -0.659 | 0.206 | -0.681 | -0.544 | -1.261 | 1.999 | 0.539 | -0.573 | -1.433 | 1.999 | -0.784 | -0.956 | -0.681 | -0.996 | 1.999 | -1.410 | 0.415 | -0.062 | -0.608 | -0.894 | -0.101 | -0.142 | -0.128 | 0.712 | 0.112 | -0.175 | -0.558 | -0.405 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dvi_A_228 | 1dvi | A | 228 | 267 | FDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLT | HHHHHHHHHHHHHHHHHHHHH-TT-SS-----HHHHHHHH | aaaaaaaaaaaaaaaaaaaaaaaalavbbbbxaaaaaaaa |
1gjy_A_156 | 1gjy | A | 156 | 195 | FDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCV | HHHHHHHHHHHHHHHHHHHHH-TT--S-----HHHHHHHH | aaaaaaaaaaaaaaaaaaaaabaalagbbxxbaaaaaaaa |
1hqv_A_148 | 1hqv | A | 148 | 187 | FDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMV | HHHHHHHHHHHHHHHHHHHHH-TT-SS-----HHHHHHHH | aaaaaaaaaaaaaaaaaaaaaxaalavbbbbxaaaaaaaa |
1juo_A_156 | 1juo | A | 156 | 195 | FDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCV | HHHHHHHHHHHHHHHHHHHHT-TT--S-----HHHHHHHH | aaaaaaaaaaaaaaaaaaaaaaaalavbbxxxaaaaaaaa |
1kfu_S_926 | 1kfu | S | 926 | 965 | FDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT | HHHHHHHHHHHHHHHHHHHHH-SS--S-----HHHHHHHH | aaaaaaaaaaaaaaaaaaaaaaaagaUbbbbxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dvi_A_228 | 1dvi | A | CACALCIUM ION | F - 228 |
1dvi_A_228 | 1dvi | A | CACALCIUM ION | D - 229 |
1dvi_A_228 | 1dvi | A | CACALCIUM ION | N - 230 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | Y - 168 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | D - 169 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | T - 170 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | D - 171 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | Q - 172 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | D - 173 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | G - 174 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | W - 175 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | I - 176 |
1hqv_A_148 | 1hqv | A | CACALCIUM ION | Q - 177 |
PDB Site Annotated loops in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.11.18 |