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Information on SUBCLASS 8.11.1
Subclass Accession number: 5040
Subclass: 8.11.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 56.5 +/- 21.8
Average RMSD (Å) : 0.260 +/- 0.089

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: hpchcGhpAWVA
(φψ)-conformation: aapaaeaaapaa
Pattern: [ADT][ADV][ADS][IV][ANRS][C][A][K][KR][IV][AV][krs][DG][GP][KNQ][G][IM][GNRS][A][W][KV][A][W]x[kn][HR]
Conservation:-0.780-0.991-0.7370.020-0.8701.8970.1910.5320.0590.033-0.439-0.958-0.230-0.248-0.4200.873-0.203-0.8120.1912.579-0.6740.1912.579-0.820-0.901-0.065
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jse_*_891jse   -89114TASVNCAKKIASGGNGMNAWVAWRNRHHHHHHHHHHHTSTTGGGGSHHHHHHaaaaaaaaaaaaxaaeaaaxaaaaaa
1jsf_*_901jsf   -90115ADAVACAKRVVRDPQGIRAWVAWRNRHHHHHHHHHHHTSTTGGGGSHHHHHHaaaaaaaaaaaaxaaeaaaxaaaaaa
1lmq_*_891lmq   -89114TVAIRCAKRVVLDPNGIGAWVAWRLHHHHHHHHHHHTTSTTGGGG-HHHHHHaaaaaaaaaaaaxaaeaaaxaaaaaa
1qqy_A_891qqy   A89114DDDIACAKRVVKDPNGMSAWVAWVKHHHHHHHHHHHTTSTTGGGGSHHHHHHaaaaaaaaaaaaxaaeaaabaaaaaa
2eql_*_892eql   -89114DDDISCAKRVVRDPKGMSAWKAWVKHHHHHHHHHHHTTSTTGGGG-HHHHHHaaaaaaaaaaaaxaaeaaabaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE R - 97
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE V - 98
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE D - 101
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE P - 102
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 103
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE A - 107
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE W - 108
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE V - 109
1lmq_*_891lmq   *     NAGN-ACETYL-D-GLUCOSAMINE A - 110

Clusters included in this Subclass
CLUSTER: HH.9.25