ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.27.1

Subclass Accession number: 5056
Subclass: 8.27.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 47953 (>75 %) 47954 (>75 %) 47955 (>75 %)

Number of loops: 3

Average sequence ID (%) : 39.8 +/- 31.8
Average RMSD (Å) : 0.567 +/- 0.208

Consensus geometry

d (Å): 21

delta (°): 45-90

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XLXhXhXXhXXp
(φψ)-conformation:	aallbapbpbaa

Pattern:	[AK]	[DK]	[KQ]	[LV]	[L]	[RT]	[LM]	[E]	[HV]	[KL]	[SV]	[L]	[DK]	[TV]	[L]	[AST]	[FW]	[DV]	[AL]	[AD]	[AR]	[CP]	[LT]	x	[NT]	[DQ]	[FL]	[IL]	[CT]	[QY]	[IY]
Conservation:	-0.671	-0.221	0.514	0.033	1.474	-0.446	0.769	2.435	-0.864	-1.182	-1.408	1.474	-0.221	-0.222	1.474	-0.556	2.121	-1.376	-0.927	-0.957	-0.702	0.006	-0.671	-1.304	0.290	0.259	0.065	0.513	0.455	0.004	-0.159

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f5q_B_126	1f5q	B	126	156	ADKLLTLEVKSLDTLSWVADRCLSTDLICYI	HHHHHHHHHHHHHHTTT------HHHHHHHH	aaaaaaaaaaaaaaalvbaxbbxaaaaaaaa
1h1r_B_288	1h1r	B	288	318	KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQY	HHHHHHHHHHHHHHHTT------HHHHHHHH	aaaaaaaaaaaaaaalUxaxxxbaaaaaaaa
1vin_*_288	1vin	-	288	318	KKQVLRMEHLVLKVLAFDLAAPTINQFLTQY	HHHHHHHHHHHHHHTTT------HHHHHHHH	aaaaaaaaaaaaaaalvbaxbwbaaaaaaaa

Clusters included in this Subclass