ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.13.1

Subclass Accession number: 5081
Subclass: 9.13.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.12 (>75 %) 1.12.2 (>75 %) 1.12.2.1
SCOP : 46457 (>75 %) 46458 (>75 %) 46532 (>75 %) 56769 (>75 %) 56770 (>75 %) 56771 (>75 %)

Number of loops: 4

Average sequence ID (%) : 75.7 +/- 0.6
Average RMSD (Å) : 0.225 +/- 0.096

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	TpXXGPNhAXpXX
(φψ)-conformation:	aappeaabaabaa

Pattern:	[Y]	[T]	[ST]	[QS]	[MQ]	[NPQ]	[G]	[P]	[NQ]	[FY]	[AS]	[AS]	[DST]	[AQ]	x	[G]	[K]	[AD]	[K]	[C]	[AV]	[R]	[D]	[I]	[G]	[Y]	[Y]	[L]	[R]	[M]	[V]	[T]	[Y]	[C]	[L]	[IV]	[AV]
Conservation:	1.202	0.273	-0.706	-0.942	-0.859	-1.423	0.737	1.202	-0.692	0.212	-0.861	-0.870	-1.264	-1.217	-1.815	0.737	0.273	-1.319	0.273	2.130	-1.097	0.273	0.737	-0.191	0.737	1.202	1.202	-0.191	0.273	0.273	-0.191	0.273	1.202	2.130	-0.191	-0.417	-1.097

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cpc_A_65	1cpc	A	65	101	YTTSQNGPNFASTQTGKDKCVRDIGYYLRMVTYCLVV	HHHHS-STTSSSSHHHHHHHHHHHHHHHHHHHHHHHH	aaaaxxeaabaabaaaaaaaaaaaaaaaaaaaaaaaa
1f99_A_65	1f99	A	65	101	YTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVV	HHHHS-STTSSSSHHHHHHHHHHHHHHHHHHHHHHHH	aaaaxxeaabaabaaaaaaaaaaaaaaaaaaaaaaaa
1gh0_A_65	1gh0	A	65	101	YTTQMQGPNYAADQRGKDKCARDIGYYLRMVTYCLIA	HHHHS-STTS-SSHHHHHHHHHHHHHHHHHHHHHHHH	aaaapxeaabaabaaaaaaaaaaaaaaaaaaaaaaaa
1phn_A_65	1phn	A	65	101	YTSQMPGPQYASSAVGKAKCARDIGYYLRMVTYCLVV	HHHHS-STTSSSSHHHHHHHHHHHHHHHHHHHHHHHH	aaaaxxeaabaabaaaaaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	T - 66
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	T - 67
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	P - 72
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	N - 73
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	F - 74
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	A - 75
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	S - 76
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	T - 79
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	G - 80
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	K - 81
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	K - 83
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	C - 84
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	V - 85
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	R - 86
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	D - 87
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	I - 88
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	Y - 90
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	Y - 91
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	R - 93
1cpc_A_65	1cpc	A	CYCPHYCOCYANOBILIN	M - 94
1f99_A_65	1f99	A	CYCPHYCOCYANOBILIN	Y - 74
1f99_A_65	1f99	A	CYCPHYCOCYANOBILIN	S - 75
1f99_A_65	1f99	A	CYCPHYCOCYANOBILIN	T - 77
1f99_A_65	1f99	A	CYCPHYCOCYANOBILIN	I - 79
1f99_A_65	1f99	A	CYCPHYCOCYANOBILIN	A - 85
1gh0_A_65	1gh0	A	CYCPHYCOCYANOBILIN	A - 76
1gh0_A_65	1gh0	A	CYCPHYCOCYANOBILIN	R - 79
1phn_A_65	1phn	A	CYCPHYCOCYANOBILIN	S - 67
1phn_A_65	1phn	A	CYCPHYCOCYANOBILIN	Q - 73
1phn_A_65	1phn	A	CYCPHYCOCYANOBILIN	V - 79

Clusters included in this Subclass

CLUSTER: HH.8.46