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Information on SUBCLASS 9.28.1
Subclass Accession number: 5096
Subclass: 9.28.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005509 (>50 %)  
SCOP : 47472 (>50 %)  47473 (>50 %)  47502 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 40.0 +/- 28.2
Average RMSD (Å) : 1.033 +/- 0.404

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 45-90 rho (°): 270-315
Consensus Sequence: XhDhccNGpIpXp
(φψ)-conformation: aapaalalbbbaa
Pattern: [DK]x[AM][FK][AD][FRY][AL][D][IV][DN][GK][N][G][KQS][I][NT]x[DT][DE][IV][LV]x[KL][AS][RS]
Conservation:-0.262-0.987-0.549-0.869-0.690-0.700-0.7302.1750.5590.563-0.5472.1752.175-0.5560.8810.060-1.053-0.2250.7050.559-0.086-1.053-0.871-0.086-0.587
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jf0_A_161jf0   A2347KFMFDYLDINGNGQITLDEIVSKASHHHHHHH-TT-SS-B-HHHHHHHHHaaaaaaaxaalavbbbaaaaaaaaa
1ohz_B_291ohz   B2953DDAKARADVDKNGSINSTDVLLLSRHHHHHHH-TT-SS--SHHHHHHHHHaaaaaaaxaalavbbbaaaaaaaaa
1qv0_A_161qv0   A2347KHMFDFLDINGNGKITLDEIVSKASHHHHHHH-TT-SS-B-HHHHHHHHHaaaaaaaxaavavbbbaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE R - 21
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE H - 22
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE K - 23
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE M - 25
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE F - 26
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE Y - 28
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE L - 29
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE I - 42
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE V - 43
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE K - 45
1jf0_A_161jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE A - 46
1ohz_B_291ohz   B     CACALCIUM ION A - 35
1ohz_B_291ohz   B     CACALCIUM ION D - 36
1ohz_B_291ohz   B     CACALCIUM ION V - 37
1ohz_B_291ohz   B     CACALCIUM ION D - 38
1ohz_B_291ohz   B     CACALCIUM ION K - 39
1ohz_B_291ohz   B     CACALCIUM ION N - 40
1ohz_B_291ohz   B     CACALCIUM ION G - 41
1ohz_B_291ohz   B     CACALCIUM ION S - 42
1ohz_B_291ohz   B     CACALCIUM ION I - 43
1ohz_B_291ohz   B     CACALCIUM ION N - 44
1ohz_B_291ohz   B     CACALCIUM ION T - 46
1ohz_B_291ohz   B     CACALCIUM ION D - 47
1qv0_A_161qv0   A     GOLGLYCEROL H - 24
1qv0_A_161qv0   A     GOLGLYCEROL M - 25
1qv0_A_161qv0   A     CZHC2-HYDROPEROXY-COELENTERAZINE F - 28
1qv0_A_161qv0   A     GOLGLYCEROL F - 28
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ohz_B_291ohz   B AC5NO3 BINDING SITE FOR CHAIN AA - 33
1ohz_B_291ohz   B AC5NO3 BINDING SITE FOR CHAIN AR - 34
1ohz_B_291ohz   B AC2CA BINDING SITE FOR CHAIN BD - 36
1ohz_B_291ohz   B AC2CA BINDING SITE FOR CHAIN BD - 38
1ohz_B_291ohz   B AC5NO3 BINDING SITE FOR CHAIN AK - 39
1ohz_B_291ohz   B AC2CA BINDING SITE FOR CHAIN BN - 40
1ohz_B_291ohz   B AC2CA BINDING SITE FOR CHAIN BS - 42
1ohz_B_291ohz   B AC2CA BINDING SITE FOR CHAIN BD - 47

Clusters included in this Subclass
CLUSTER: HH.8.105