ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.10.1

Subclass Accession number: 5107
Subclass: 10.10.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.9 (>75 %)  1.9.3 (>75 %)  1.9.3.1
GO : GO:0004129 (>50 %)  GO:0004857 (>75 %)  GO:0004859 (>75 %)  GO:0005386 (>50 %)  GO:0005509 (>75 %)  GO:0005543 (>75 %)  GO:0005544 (>75 %)  GO:0008289 (>75 %)  GO:0008324 (>50 %)  GO:0015002 (>50 %)  GO:0015075 (>50 %)  GO:0015077 (>50 %)  GO:0015078 (>50 %)  GO:0015399 (>50 %)  GO:0016675 (>50 %)  GO:0016676 (>50 %)  GO:0019834 (>75 %)
SCOP : 47873 (>75 %)  47874 (>75 %)  47875 (>75 %)  81441 (>75 %)  81442 (>75 %)  81443 (>75 %)

Number of loops: 4

Average sequence ID (%) : 56.0 +/- 20.0
Average RMSD (Å) : 0.625 +/- 0.126

Consensus geometry

d (Å): 25

delta (°): 45-90

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XXGXRpEpXXhcpX
(φψ)-conformation:	aalappapapbpaa

Pattern:	[fg]	x	[fy]	[qr]	[kr]	[av]	[l]	[lv]	[st]	[l]	[as]	[adk]	[g]	[dgr]	[r]	[ds]	[e]	[ds]	x	x	[ilv]	[dn]	[de]	x	[l]	[am]	[dkr]	[qt]	[d]	[a]	[qr]	x	[l]	[y]	[ek]	[a]
Conservation:	-0.823	-0.921	1.034	0.051	0.324	-0.577	0.593	-0.285	-0.181	0.593	-0.285	-1.369	1.811	-1.369	1.202	-0.118	1.202	-0.381	-1.259	-1.436	-0.219	0.359	0.570	-1.301	0.593	-0.772	-0.895	-0.540	1.811	0.593	0.041	-1.707	0.593	2.420	0.051	0.593

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1axn_*_151	1axn	-	151	186	GDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKA	HHHHHHHHHHHTT-S---S---HHHHHHHHHHHHHH	eaaaaaaaaaaalapxapaxbbaaaaaaaaaaaaaa
1hm6_A_174	1hm6	A	174	209	GDYQKALLSLAKGDRSEDLAINDDLADTDARALYEA	HHHHHHHHHHHTT------S--HHHHHHHHHHHHHH	eaaaaaaaaaaalaxpaxaxxxaaaaaaaaaaaaaa
1i4a_A_145	1i4a	A	145	180	FMFQRVLVSLSAGGRDESNYLDDALMRQDAQDLYEA	HHHHHHHHHHHTT-S--S----HHHHHHHHHHHHHH	eaaaaaaaaaaalappaxaxbxaaaaaaaaaaaaaa
1mcx_A_174	1mcx	A	174	209	GDYQKALLSLAKGDRSEDLAINDDLADTDARALYEA	HHHHHHHHHHHT------SS--HHHHHHHHHHHHHH	eaaaaaaaaaaalaxpaxaxxxaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass