ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.13.1

Subclass Accession number: 5133
Subclass: 11.13.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.5 (>75 %)  2.5.1 (>75 %)  2.5.1.18
GO : GO:0004364 (>75 %)  GO:0016765 (>75 %)
SCOP : 47615 (>75 %)  47616 (>75 %)  47617 (>75 %)

Number of loops: 3

Average sequence ID (%) : 86.3 +/- -61.8
Average RMSD (Å) : 0.167 +/- 0.058

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	SHGQDYLVGNpLpRh
(φψ)-conformation:	aaUpababllbpbaa

Pattern:	[Y]	[FL]	[P]	[A]	[F]	[E]	[K]	[V]	[L]	[K]	[S]	[H]	[G]	[Q]	[D]	[Y]	[L]	[V]	[G]	[N]	[KR]	[L]	[ST]	[R]	[AV]	[D]	[IV]	[H]	[L]	[LV]	[E]	[L]	[L]	[LY]	[Y]	[V]	[E]	[E]	[FL]
Conservation:	1.427	-1.453	1.427	-0.479	0.792	0.157	0.157	-0.479	-0.479	0.157	-0.479	2.063	0.792	0.157	0.792	1.427	-0.479	-0.479	0.792	0.792	-0.791	-0.479	-1.259	0.157	-1.747	0.792	-0.795	2.063	-0.479	-1.430	0.157	-0.479	-0.479	-1.624	1.427	-0.479	0.157	0.157	-1.474

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ev9_A_132	1ev9	A	132	170	YLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELLLYVEEF	HHHHHHHHHHHH--SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaaUxababvlbxbaaaaaaaaaaaaaaaa
1k3y_A_132	1k3y	A	132	170	YFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEEL	HHHHHHHHHHHH--SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaavxababvlbpbaaaaaaaaaaaaaaaa
1ml6_A_131	1ml6	A	131	169	YLPAFEKVLKSHGQDYLVGNRLTRVDVHLLELLLYVEEL	HHHHHHHHHHHH--SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaaUxababvlbxbaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1k3y_A_132	1k3y	A	GOLGLYCEROL	R - 155
1k3y_A_132	1k3y	A	GOLGLYCEROL	H - 159

Clusters included in this Subclass

CLUSTER: HH.10.71