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Information on SUBCLASS 13.6.1
Subclass Accession number: 5152
Subclass: 13.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 46457 (>75 %)  46458 (>75 %)  46532 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 56.4 +/- 1.1
Average RMSD (Å) : 0.533 +/- 0.231

Consensus geometry
d (Å): 19 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XppPphhXPGGNAYXpp
(φψ)-conformation: aabaaaappgpaapeaa
Pattern: [ARS][ES][ART][I][V][AKT][NQ][A][AG][DR][AQS][L][F][AQ][EK][QR][P][DQ][LV][IV][AS][P][G][G][N][A][Y][GT][QS][ER][MR][MT][A][AT][C][L][R][D][LM][DE][IY][IVY][L][R][LY][IV][ST][Y][AG][IM][FIV][A]
Conservation:-1.282-0.737-1.3430.2310.231-1.343-0.4180.231-0.622-1.003-1.1610.2311.320-1.007-0.307-0.3071.865-0.462-0.581-0.040-0.5431.8651.3201.3201.3200.2311.865-1.003-0.737-0.577-0.848-0.8480.231-0.7372.9540.2310.7751.320-0.1510.079-0.778-0.9190.2310.775-0.644-0.040-0.3411.865-0.622-0.463-0.8590.231
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b33_A_461b33   A4697RERIVKQAGDQLFQKRPDVVSPGGNAYGQEMTATCLRDLDYYLRLITYGIVAHHHHHHHHHHHHHHH--GGGSTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaabaaaaxpgxaaxeaaaaaaaaaaaaaaaaaaaaaaaa
1cpc_B_481cpc   B4899SSTIVANAARSLFAEQPQLIAPGGNAYTSRRMAACLRDMEIILRYVTYAIFAHHHHHHHHHHHHHHH-GGGTSTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaabaaaappvxaaxeaaaaaaaaaaaaaaaaaaaaaaaa
1f99_B_481f99   B4899ASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAHHHHHHHHHHHHHHH-GGGSSTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaabaaaaxpvxaaxeaaaaaaaaaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b33_A_461b33   A     CYCPHYCOCYANOBILIN L - 57
1b33_A_461b33   A     CYCPHYCOCYANOBILIN F - 58
1b33_A_461b33   A     CYCPHYCOCYANOBILIN V - 64
1b33_A_461b33   A     CYCPHYCOCYANOBILIN V - 65
1b33_A_461b33   A     CYCPHYCOCYANOBILIN G - 69
1b33_A_461b33   A     CYCPHYCOCYANOBILIN N - 70
1b33_A_461b33   A     CYCPHYCOCYANOBILIN A - 71
1b33_A_461b33   A     CYCPHYCOCYANOBILIN Y - 72
1b33_A_461b33   A     CYCPHYCOCYANOBILIN M - 76
1b33_A_461b33   A     CYCPHYCOCYANOBILIN T - 77
1b33_A_461b33   A     CYCPHYCOCYANOBILIN T - 79
1b33_A_461b33   A     CYCPHYCOCYANOBILIN C - 80
1b33_A_461b33   A     CYCPHYCOCYANOBILIN L - 81
1b33_A_461b33   A     CYCPHYCOCYANOBILIN R - 82
1b33_A_461b33   A     CYCPHYCOCYANOBILIN D - 83
1b33_A_461b33   A     CYCPHYCOCYANOBILIN L - 84
1b33_A_461b33   A     CYCPHYCOCYANOBILIN Y - 86
1b33_A_461b33   A     CYCPHYCOCYANOBILIN Y - 87
1b33_A_461b33   A     CYCPHYCOCYANOBILIN R - 89
1b33_A_461b33   A     CYCPHYCOCYANOBILIN L - 90
1cpc_B_481cpc   B     CYCPHYCOCYANOBILIN L - 59
1cpc_B_481cpc   B     CYCPHYCOCYANOBILIN F - 60
1cpc_B_481cpc   B     CYCPHYCOCYANOBILIN L - 66
1cpc_B_481cpc   B     CYCPHYCOCYANOBILIN G - 71
1cpc_B_481cpc   B     CYCPHYCOCYANOBILIN N - 72
1cpc_B_481cpc   B     NMAN-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-2-METHYLALANINE N - 72
1f99_B_481f99   B     CYCPHYCOCYANOBILIN R - 57
1f99_B_481f99   B     CYCPHYCOCYANOBILIN I - 67
1f99_B_481f99   B     CYCPHYCOCYANOBILIN A - 73
1f99_B_481f99   B     CYCPHYCOCYANOBILIN Y - 74
1f99_B_481f99   B     CYCPHYCOCYANOBILIN T - 75
1f99_B_481f99   B     CYCPHYCOCYANOBILIN S - 76
1f99_B_481f99   B     CYCPHYCOCYANOBILIN R - 77
1f99_B_481f99   B     CYCPHYCOCYANOBILIN R - 78
1f99_B_481f99   B     CYCPHYCOCYANOBILIN M - 79
1f99_B_481f99   B     CYCPHYCOCYANOBILIN A - 81
1f99_B_481f99   B     CYCPHYCOCYANOBILIN C - 82
1f99_B_481f99   B     CYCPHYCOCYANOBILIN L - 83
1f99_B_481f99   B     CYCPHYCOCYANOBILIN R - 84
1f99_B_481f99   B     CYCPHYCOCYANOBILIN D - 85
1f99_B_481f99   B     CYCPHYCOCYANOBILIN M - 86
1f99_B_481f99   B     CYCPHYCOCYANOBILIN I - 88
1f99_B_481f99   B     CYCPHYCOCYANOBILIN V - 89
1f99_B_481f99   B     CYCPHYCOCYANOBILIN Y - 92

Clusters included in this Subclass
CLUSTER: HH.12.31