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Information on SUBCLASS 16.8.1
Subclass Accession number: 5170
Subclass: 16.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005489 (>75 %)  
SCOP : 46625 (>75 %)  46626 (>75 %)  46627 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 41.0 +/- 12.9
Average RMSD (Å) : 0.867 +/- 0.208

Consensus geometry
d (Å): 23 delta (°): 135-180 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXcDXcAKXcMXFKhXKXXX
(φψ)-conformation: aalbaapbbapabbpabgaa
Pattern: [P][GKT]x[FW][L][KV][EK][KMY][LT][DG][D][AK][GK][A][K][GT][GK][M][AT][F][K][LM][AGK][K][EGN][AGQ][ADE][AD][HV][ANV][AI][FWY][AL][AY]x
Conservation:2.404-1.139-0.8910.9310.725-0.6430.230-0.953-0.361-0.0261.844-0.406-0.4810.7251.285-0.499-0.4681.285-0.1001.8441.2850.279-0.9531.285-0.704-0.953-0.704-0.468-0.797-1.263-0.6110.725-0.611-0.617-1.201
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c2r_A_791c2r   A79113PGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASHHHHHHHHHT-TT---S-----SS-HHHHHHHHHHaaaaaaaaalbaaxbbaxabbxabgaaaaaaaaaa
1cot_*_831cot   -83117PKPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLAQHHHHHHHHHT-TT---S------S-HHHHHHHHHHaaaaaaaaavbaapxbabaxbbabvaaaaaaaaaa
1cxc_*_831cxc   -83117PTKFLKEYTGDAKAKGKMTFKLKKEADAHNIWAYLHHHHHHHHHS-TT---S-------HHHHHHHHHHHaaaaaaaaavbaapbxaxabbxabaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 83
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 93
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 94
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 95
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 96
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 97
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 100
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 107
1c2r_A_791c2r   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 111
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 87
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 97
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 98
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 99
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 100
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 101
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 102
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 104
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 111
1cot_*_831cot   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 115
1cxc_*_831cxc   *     HEMPROTOPORPHYRIN IX CONTAINING FE G - 98
1cxc_*_831cxc   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 104
1cxc_*_831cxc   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 113
1cxc_*_831cxc   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 117

Clusters included in this Subclass
CLUSTER: HH.15.17