Information on SUBCLASS 28.1.1 |
Subclass Accession number: 5184
Subclass: 28.1.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004096 (>75 %) GO:0004601 (>75 %) GO:0016684 (>75 %) SCOP : 48112 (>75 %) 48113 (>75 %) 74753 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 83.7 +/- -54.9 Average RMSD (Å) : 0.167 +/- 0.058 Consensus geometry
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Consensus Sequence: | GTYRXADGRGGAhXGpQRFAPhNSWPDNXNLD |
(φψ)-conformation: | aapbaaalpeeaaalaaabpwaaapaaaplaa |
Pattern: | [G] | [GP] | [L] | [FM] | [I] | [R] | [LM] | [AT] | [W] | [H] | [AS] | [A] | [G] | [T] | [Y] | [R] | [IT] | [A] | [D] | [G] | [R] | [G] | [G] | [A] | [AG] | [EGT] | [G] | [NQR] | [Q] | [R] | [F] | [A] | [P] | [IL] | [N] | [S] | [W] | [P] | [D] | [N] | [AT] | [N] | [L] | [D] | [K] | [A] | [R] | [R] | [L] |
Conservation: | 0.546 | -1.296 | -0.433 | -1.029 | -0.433 | 0.057 | -0.786 | -1.299 | 2.994 | 1.525 | -1.165 | -0.433 | 0.546 | 0.057 | 1.036 | 0.057 | -1.518 | -0.433 | 0.546 | 0.546 | 0.057 | 0.546 | 0.546 | -0.433 | -1.122 | -2.064 | 0.546 | -1.412 | 0.057 | 0.057 | 0.546 | -0.433 | 1.036 | -0.919 | 0.546 | -0.433 | 2.994 | 1.036 | 0.546 | 0.546 | -1.299 | 0.546 | -0.433 | 0.546 | 0.057 | -0.433 | 0.057 | 0.057 | -0.433 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1itk_A_87 | 1itk | A | 87 | 135 | GPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRL | HHHHHHHHHHHHTT--TTT---SSTT-GGGSTTGGG-GGGTTHHHHHHH | aaaaaaaaaaaaaaxbaaavxeeaaavaaabxwaaaxaaapvaaaaaaa |
1mwv_A_103 | 1mwv | A | 103 | 151 | GGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRL | HHHHHHHHHHHHTT--TTT---SSTT-GGGSTTGGG-GGGTTHHHHHHH | aaaaaaaaaaaaaapbaUavxeeaaalaaabxwaaaxaaapvaaaaaaa |
1ub2_A_85 | 1ub2 | A | 85 | 133 | GGLMIRLTWHAAGTYRIADGRGGAGTGNQRFAPLNSWPDNTNLDKARRL | HHHHHHHHHHHHTT--TTT---SSTT-GGGSTTGGG-GGGTTHHHHHHH | aaaaaaaaaaaaaaxbaaavxeeaaavaaabxwaaaxaaapvaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.29.0 |