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Information on SUBCLASS 28.1.1
Subclass Accession number: 5184
Subclass: 28.1.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004096 (>75 %)  GO:0004601 (>75 %)  GO:0016684 (>75 %)  
SCOP : 48112 (>75 %)  48113 (>75 %)  74753 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 83.7 +/- -54.9
Average RMSD (Å) : 0.167 +/- 0.058

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: GTYRXADGRGGAhXGpQRFAPhNSWPDNXNLD
(φψ)-conformation: aapbaaalpeeaaalaaabpwaaapaaaplaa
Pattern: [G][GP][L][FM][I][R][LM][AT][W][H][AS][A][G][T][Y][R][IT][A][D][G][R][G][G][A][AG][EGT][G][NQR][Q][R][F][A][P][IL][N][S][W][P][D][N][AT][N][L][D][K][A][R][R][L]
Conservation:0.546-1.296-0.433-1.029-0.4330.057-0.786-1.2992.9941.525-1.165-0.4330.5460.0571.0360.057-1.518-0.4330.5460.5460.0570.5460.546-0.433-1.122-2.0640.546-1.4120.0570.0570.546-0.4331.036-0.9190.546-0.4332.9941.0360.5460.546-1.2990.546-0.4330.5460.057-0.4330.0570.057-0.433
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1itk_A_871itk   A87135GPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLHHHHHHHHHHHHTT--TTT---SSTT-GGGSTTGGG-GGGTTHHHHHHHaaaaaaaaaaaaaaxbaaavxeeaaavaaabxwaaaxaaapvaaaaaaa
1mwv_A_1031mwv   A103151GGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLHHHHHHHHHHHHTT--TTT---SSTT-GGGSTTGGG-GGGTTHHHHHHHaaaaaaaaaaaaaapbaUavxeeaaalaaabxwaaaxaaapvaaaaaaa
1ub2_A_851ub2   A85133GGLMIRLTWHAAGTYRIADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLHHHHHHHHHHHHTT--TTT---SSTT-GGGSTTGGG-GGGTTHHHHHHHaaaaaaaaaaaaaaxbaaavxeeaaavaaabxwaaaxaaapvaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 87
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 88
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 89
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 91
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 92
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 95
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 96
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 125
1itk_A_871itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 127
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 103
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 104
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 105
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 106
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 107
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 108
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 111
1mwv_A_1031mwv   A     PEOHYDROGEN PEROXIDE W - 111
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 112
1mwv_A_1031mwv   A     PEOHYDROGEN PEROXIDE H - 112
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 141
1mwv_A_1031mwv   A     PEOHYDROGEN PEROXIDE D - 141
1mwv_A_1031mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 143
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 85
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 86
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 87
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 88
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 89
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 90
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 93
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 94
1ub2_A_851ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 125

Clusters included in this Subclass
CLUSTER: HH.29.0