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Information on SUBCLASS 0.1.11
Subclass Accession number: 5198
Subclass: 0.1.11 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 7.5 +/- 14.2
Average RMSD (Å) : 0.533 +/- 0.105

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: pXXX
(φψ)-conformation: aabb
Pattern: [adegkqrs]xx[adegnrst]xxx
Conservation:0.297-0.266-0.9471.3260.0750.995-1.480
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxs_A_4781bxs   A481487GFHEYTEHHHTTEEaaaaabb
1ek9_A_4091ek9   A414420ALNNALSHHHHTEEaaaaabI
1euh_A_4571euh   A460466SIEAMTTHHHHTEEaaaaabb
1f0x_A_4751f0x   A476482EIDSQLVHHHTTEEaaaaaba
1f8f_A_2691f8f   A274280QGVDALGHHHHTEEaaaaaxx
1fcy_A_2561fcy   A274280RICTRYTHHHHTEEaaaaaxb
1gzd_A_351gzd   A3541RFNHFSLHHHHSEEaaaaabb
1iat_A_351iat   A3541RFNHFSLHHHHTEEaaaaabb
1iz0_A_2011iz0   A203209ESLGLLAHHHTTEEaaaaaxx
1llu_A_2471llu   A252258QAIGMARHHHTTEEaaaaaxx
1mdo_A_3491mdo   A353359WNSERICHHHTTEEaaaaaxb
1nd7_A_8091nd7   A811817DWQRNTVHHHHTEEaaaaabb
1oi2_A_1801oi2   A189195KLNNQGHHHHTTEEaaaaabb
1uuf_A_2511uuf   A253259DFTTLLKHHHTTEEaaaaaxx
2prg_A_3112prg   A329335MLASLMNHHHHTEEaaaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ek9_A_4091ek9   A     MSESELENOMETHIONINE L - 412
1ek9_A_4091ek9   A     MSESELENOMETHIONINE L - 413
1ek9_A_4091ek9   A     MSESELENOMETHIONINE N - 416
1ek9_A_4091ek9   A     MSESELENOMETHIONINE L - 419
1f0x_A_4751f0x   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 489
1f8f_A_2691f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 270
1f8f_A_2691f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 271
1f8f_A_2691f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 287
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE I - 260
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE L - 263
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE K - 264
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE A - 265
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE C - 267
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID L - 268
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID I - 270
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID L - 271
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID M - 272
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID R - 274
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID I - 275
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID R - 278
1llu_A_2471llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 248
1llu_A_2471llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 249
1llu_A_2471llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 252
1llu_A_2471llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 265
1mdo_A_3491mdo   A     MSESELENOMETHIONINE T - 351
1mdo_A_3491mdo   A     MSESELENOMETHIONINE E - 352
1mdo_A_3491mdo   A     MSESELENOMETHIONINE N - 354
1mdo_A_3491mdo   A     MSESELENOMETHIONINE S - 355
1mdo_A_3491mdo   A     MSESELENOMETHIONINE I - 358
1mdo_A_3491mdo   A     MSESELENOMETHIONINE C - 359
1mdo_A_3491mdo   A     MSESELENOMETHIONINE L - 361
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) H - 323
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) I - 326
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) Y - 327
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 330
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 333
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) M - 334
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 311
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.Q - 314
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.V - 315
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 318
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.H - 323
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.Y - 327
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.L - 330

Clusters included in this Subclass
CLUSTER: HE.1.19
CLUSTER: HE.2.36