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Information on SUBCLASS 0.1.23
Subclass Accession number: 5210
Subclass: 0.1.23 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 12.6 +/- 15.9
Average RMSD (Å) : 0.687 +/- 0.136

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXp
(φψ)-conformation: aabb
Pattern: xxx[afgkv]x[efkl][LMV][AGKNQS][dehk]xx[ADENRS][cfitv]
Conservation:-0.558-0.855-0.680-0.9720.112-0.7192.7860.2550.287-0.494-0.3590.5130.687
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxy_A_411bxy   A4456RGNVEKVAHLVRVHHHHHHTTTTEEEaaaaaaaaaabbb
1dlj_A_101dlj   A1325LSLGVLLSLQNEVHHHHHHHTTTSEEaaaaaaaaaabxb
1i6l_A_231i6l   A2335LRQFVELQHEYNCHHHHHHHTTTSEEaaaaaaaaaabxb
1j9j_A_141j9j   A1729IVLAELLSEEHEVHHHHHHHTTTSEEaaaaaaaaaabxb
1jj2_V_391jj2   V4254RGMVAKVNDFVAFHHHHHHHGGGEEEaaaaaaaaaabbb
1nvt_A_1381nvt   A141153RAVAFELAKDNNIHHHHHHHTSSSEEaaaaaaaaaabxb
1o69_A_2451o69   A257268EWYKEFLGEYFS.HHHHHHHTTTEE.aaaaaaaaaabx.
1qf9_A_951qf9   A99111NSWEENMKDFVDTHHHHHHHTTT-EEaaaaaaaaaabxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 10
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 11
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 12
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 28
1i6l_A_231i6l   A     TYMTRYPTOPHANYL-5'AMP F - 26
1i6l_A_231i6l   A     GOLGLYCEROL Q - 30
1i6l_A_231i6l   A     MSESELENOMETHIONINE H - 31
1i6l_A_231i6l   A     MSESELENOMETHIONINE E - 32
1i6l_A_231i6l   A     MSESELENOMETHIONINE Y - 33
1i6l_A_231i6l   A     GOLGLYCEROL Y - 33
1i6l_A_231i6l   A     MSESELENOMETHIONINE N - 34
1i6l_A_231i6l   A     GOLGLYCEROL N - 34
1i6l_A_231i6l   A     GOLGLYCEROL C - 35
1i6l_A_231i6l   A     GOLGLYCEROL Y - 36
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 138
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 139
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 140
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 156
1qf9_A_951qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE N - 97

Clusters included in this Subclass
CLUSTER: HE.3.96