ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.3.5

Subclass Accession number: 522
Subclass: 2.3.5

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 10.0 +/- 14.0
Average RMSD (Å) : 0.362 +/- 0.139

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXcXhX
(φψ)-conformation:	bbeabb

Pattern:	x	[cdnrwy]	[ADGKQ]	x	[afgilmvwy]	x
Conservation:	-0.039	-0.704	1.986	-0.426	-0.558	-0.260

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ekf_A_234	1ekf	A	237	242	EVGTMN	EETTEE	bbeabx
1gzq_A_217	1gzq	A	221	226	MRGEQE	EETTEE	bbeaxx
1jln_A_401	1jln	A	403	408	IYGKVE	EETTEE	bbeabb
1ksi_A_237	1ksi	A	239	244	SWANWK	EETTEE	bbeabb
1lar_A_1443	1lar	A	1445	1450	TCGLIQ	EETTEE	bbeabx
1lar_A_1733	1lar	A	1734	1739	RYQYFV	EETTEE	bbeabx
1lvl_*_282	1lvl	-	282	287	MNGAAI	EETTEE	bbeabx
1nqj_A_972	1nqj	A	973	978	VDGNKV	EETTEE	xbeabb
1oq1_A_162	1oq1	A	164	169	KDKGYV	EETTEE	bbeaxb
1qdl_A_378	1qdl	A	381	386	LNKELL	EETTEE	bbeabb
1ut7_A_88	1ut7	A	89	94	VAGSGY	EETTEE	xbeabb
1vk6_A_136	1vk6	A	136	141	RRDDSI	EETTEE	xbeabb
2shp_A_377	2shp	A	379	384	EYGVMR	EETTEE	bbeabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ekf_A_234	1ekf	A	PLPPYRIDOXAL-5'-PHOSPHATE	E - 237
1ekf_A_234	1ekf	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 239
1ekf_A_234	1ekf	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 240
1ekf_A_234	1ekf	A	PLPPYRIDOXAL-5'-PHOSPHATE	M - 241
1ekf_A_234	1ekf	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 242
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	L - 162
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	D - 165
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	K - 166
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	G - 167
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	Y - 168
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	V - 169
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	F - 171
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	S - 172
1oq1_A_162	1oq1	A	MSESELENOMETHIONINE	I - 173
1ut7_A_88	1ut7	A	AUGOLD ION	T - 106
1vk6_A_136	1vk6	A	MSESELENOMETHIONINE	R - 136

Clusters included in this Subclass

CLUSTER: HA.1.49

CLUSTER: HA.1.65

CLUSTER: HA.2.32