Logo
Information on SUBCLASS 0.1.41
Subclass Accession number: 5228
Subclass: 0.1.41 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 20.6 +/- 23.8
Average RMSD (Å) : 0.480 +/- 0.192

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hhXp
(φψ)-conformation: aaba
Pattern: [gr]x[KST][ILV][CFIV][an][ags][flv][as][DEKT][EKR][FV]x[CLV]x[ADTV][adr]
Conservation:-0.855-0.5820.7262.0840.181-0.754-0.568-0.6450.0070.1331.8201.113-0.1220.675-1.041-0.746-1.427
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1m0s_A_1001m0s   A102118REKIVAALAKKFICIVDHHHHHHHHEEEEEEEEEaaaaaaaaxabxbxbbx
1o8b_A_1001o8b   A102118REKIIASVAEKFICIADHHHHHHHHEEEEEEEEEaaaaaaaaxabxbxbbx
1pvg_A_1451pvg   A145161GAKLCNIFSTEFILETAHHHHHHHTEEEEEEEEEaaaaaaaababbbbbbb
1q4r_A_841q4r   A89105FATIFLGSLDKVLVIDYHHHHHHHTEEEEEEEEEaaaaaaaaxabbbbbbb
1s16_A_11151s16   A11151131GISVVNALSKRVEVNVRHHHHHHHTEEEEEEEEEaaaaaaaababbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m0s_A_1001m0s   A     CITCITRIC ACID L - 100
1m0s_A_1001m0s   A     CITCITRIC ACID E - 103
1m0s_A_1001m0s   A     CITCITRIC ACID I - 116
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE L - 100
1o8b_A_1001o8b   A     MSESELENOMETHIONINE T - 101
1o8b_A_1001o8b   A     MSESELENOMETHIONINE R - 102
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE E - 103
1o8b_A_1001o8b   A     MSESELENOMETHIONINE I - 105
1o8b_A_1001o8b   A     MSESELENOMETHIONINE I - 106
1o8b_A_1001o8b   A     MSESELENOMETHIONINE F - 113
1o8b_A_1001o8b   A     MSESELENOMETHIONINE C - 115
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE I - 116
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE D - 118
1pvg_A_1451pvg   A     MGMAGNESIUM ION G - 145
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 145
1pvg_A_1451pvg   A     MSESELENOMETHIONINE A - 146
1pvg_A_1451pvg   A     MGMAGNESIUM ION A - 146
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 146
1pvg_A_1451pvg   A     MSESELENOMETHIONINE K - 147
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 147
1pvg_A_1451pvg   A     MSESELENOMETHIONINE L - 148
1pvg_A_1451pvg   A     MSESELENOMETHIONINE N - 150
1pvg_A_1451pvg   A     MSESELENOMETHIONINE I - 151
1pvg_A_1451pvg   A     MSESELENOMETHIONINE F - 152
1pvg_A_1451pvg   A     MSESELENOMETHIONINE S - 153
1s16_A_11151s16   A     MGMAGNESIUM ION G - 1115
1s16_A_11151s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 1115
1s16_A_11151s16   A     MGMAGNESIUM ION I - 1116
1s16_A_11151s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER I - 1116
1s16_A_11151s16   A     MGMAGNESIUM ION S - 1117
1s16_A_11151s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 1117
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o8b_A_1001o8b   A AC2ABF BINDING SITE FOR CHAIN FE - 103

Clusters included in this Subclass
CLUSTER: HE.0.10