Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 1.2.4

Subclass Accession number: 5280 Subclass: 1.2.4 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 77 Average sequence ID (%) : 15.2 +/- 17.1 Average RMSD (Å) : 0.445 +/- 0.156 Consensus geometry d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a79_A_142	1a79	A	151	159	AHSVRKKLL	HHHTT-EEE	aaaalbxbb
1a99_A_302	1a99	A	309	316	SDHVFYAN.	HHHH--EE.	aaaavbxx.
1ak2_*_29	1ak2	-	37	45	AKNFCVCHL	HHHHT-EEE	aaaalbxxb
1amf_*_14	1amf	-	25	33	KKEKGVDVV	HHHH--EEE	aaaavxxbb
1bu6_O_416	1bu6	O	423	431	SDILGTRVE	HHHHTSEEE	aaaavbxbx
1ctq_A_127	1ctq	A	134	142	ARSYGIPYI	HHHHT--EE	aaaavbxbb
1dbx_A_141	1dbx	A	145	153	AKVLGAEFT	HHHHT-EEE	aaaavxbxb
1e4f_T_344	1e4f	T	349	357	TEVFKSPVR	HHHH-S-EE	aaaalbxbb
1ea5_A_133	1ea5	A	136	144	AYTEEVVLV	HHHHT-EEE	aaaalbxbb
1ekk_A_148	1ekk	A	158	166	AQKLNTVIA	HHHHTSEEE	aaaalbxbb
1f5m_A_99	1f5m	A	104	112	AASTKETQI	HHHHTS-EE	aaaavbxbb
1f89_A_199	1f89	A	212	220	AVDNQVYVM	HHHHTSEEE	aaaalbxbb
1fiq_C_806	1fiq	C	816	824	AYKTGHPVR	HHHH-S-EE	aaaavbxbb
1fo6_A_79	1fo6	A	85	93	AAELGIGFN	HHHHT-EEE	aaaavbxbb
1g16_A_144	1g16	A	151	159	AKELGIPFI	HHHHT--EE	aaaavbxbb
1g3q_A_182	1g3q	A	186	194	EDVMEVPLL	HHHH-S-EE	aaaavbpxa
1g61_A_2034	1g61	A	2041	2049	SEVLETKCL	HHHHT-EEE	aaaalbxbb
1g61_A_2128	1g61	A	2132	2140	EDSLNVEVE	HHHH-SEEE	aaaavbpbb
1g62_A_123	1g62	A	130	138	SDVLGVEVF	HHHHTSEEE	aaaalbxbb
1g62_A_167	1g62	A	174	182	SSLLQVPLV	HHHHTS-EE	aaaavbwbb
1g8t_A_79	1g8t	A	80	88	NAALKVDRG	HHHH-EEEE	aaaalbbxx
1gef_A_59	1gef	A	69	77	SRRFGGIPV	HHHHT-EEE	aaaagbxwb
1geg_A_112	1geg	A	125	133	FKKEGHGGK	HHHHTS-EE	aaaavbxeb
1gml_A_298	1gml	A	304	312	LMRANVTAI	HHHTT-EEE	aaaavbxbb
1gpj_A_201	1gpj	A	208	215	ARDLGGEA.	HHHHT-EE.	aaaavbbx.
1gs5_A_161	1gs5	A	169	177	AATLGADLI	HHHHT-EEE	aaaavxxbb
1h5q_A_48	1h5q	A	56	64	GKEFGVKTK	HHHHT--EE	aaaavbxbb
1h6d_A_398	1h6d	A	414	422	AARTGRPVN	HHHHSS-EE	aaaavbxbx
1hk8_A_416	1hk8	A	431	439	TERTGFAFS	HHHHS-EEE	aaaavxxxb
1i58_A_365	1i58	A	373	381	AKKMNKEVN	HHHTT--EE	aaaalbbbx
1iwe_A_424	1iwe	A	434	442	ENHMGVAVK	HHHHTS-EE	aaaavbxxa
1j0a_A_28	1j0a	A	31	39	SREIGADVY	HHHHTSEEE	aaaavbxbb
1j20_A_11	1j20	A	21	29	KETYRAEVI	HHHHT-EEE	aaaalbxbb
1j31_A_183	1j31	A	185	193	ALENRVYTI	HHHHT-EEE	aaaalbxbb
1jce_A_293	1jce	A	298	306	QKETGISVI	HHHHSS-EE	aaaavbxbb
1jg1_A_104	1jg1	A	110	118	SEIVKTDVY	HHHH-S-EE	aaaavbpbb
1jj2_R_34	1jj2	R	42	50	EEQYDVTVE	HHHHT--EE	aaaalbbxa
1jvw_A_105	1jvw	A	105	113	SRERGKPTT	HHHHTS-EE	aaaavbxbx
1jwq_A_102	1jwq	A	113	121	APATGLTDR	HHHH-S-EE	aaaavxpxa
1k47_A_150	1k47	A	153	161	CIAAEDLVL	HHHHTS-EE	aaaalbxbb
1k6j_A_225	1k6j	A	233	241	SRALNRRVT	HHHHTS-EE	aaaalbxbb
1kjn_A_89	1kjn	A	99	107	AGILNTETL	HHHH-SEEE	aaaalbxbb
1kqp_A_128	1kqp	A	147	154	GGQEGLLV.	HHHHT-EE.	aaaavbxx.
1kyh_A_168	1kyh	A	176	184	AAQLQTVIV	HHHHTSEEE	aaaavbxbb
1l1e_A_77	1l1e	A	83	91	IEKYDVNVV	HHHH--EEE	aaaalbxbb
1lh0_A_1166	1lh0	A	1171	1179	ERDYGCKVI	HHHH--EEE	aaaalbbxx
1lzl_A_99	1lzl	A	106	114	ARELGFAVA	HHHH--EEE	aaaavbxbb
1mx1_A_1155	1mx1	A	1158	1166	AAHENVVVV	HHHHT-EEE	aaaalbxbb
1n0w_A_253	1n0w	A	256	264	ADEFGVAVV	HHHH--EEE	aaaavxxbb
1n5m_A_136	1n5m	A	139	147	AQVEGAVLV	HHHH--EEE	aaaavxbbb
1n62_B_279	1n62	B	288	296	SIVLGVPVK	HHHHSS-EE	aaaavbxbx
1nbw_A_375	1nbw	A	380	388	SARLQTEVV	HHHHTSEEE	aaaalbxbb
1nhd_A_281	1nhd	A	300	308	GRNYNIRIN	HHHH--EEE	aaaavbxbb
1o63_A_110	1o63	A	117	125	CESKGWHCR	HHHHT--EE	aaaavxxbb
1obd_A_127	1obd	A	133	139	YVKTGTV..	HHHHSEE..	aaaavbb..
1obr_*_227	1obr	-	241	249	AQTNGYTPQ	HHHH--EEE	aaaavxbxb
1ofu_X_138	1ofu	X	148	156	AQLGQAQSL	HHHHT-EEE	aaaalbbbb
1ols_B_262	1ols	B	269	277	VIKTGRLLI	HHHH--EEE	aaaavbbbb
1ore_A_72	1ore	A	76	84	AQELGLGCV	HHHTT-EEE	aaaavbxbb
1p0i_A_131	1p0i	A	134	142	ARVERVIVV	HHHH--EEE	aaaalbxbb
1pfk_A_227	1pfk	A	235	243	EKETGRETR	HHHHSS-EE	aaaavbxbb
1pox_A_146	1pox	A	157	165	AYAHQGVAV	HHHHTSEEE	aaaalbbbb
1pox_A_59	1pox	A	70	78	AKLTGKIGV	HHHHSS-EE	aaaavxpxb
1qe3_A_121	1qe3	A	124	132	AAQGEVIVV	HHHHT-EEE	aaaalbxbb
1qlm_A_19	1qlm	A	19	27	AELLNVEVQ	HHHHT-EEE	aaaalbbbb
1qz3_A_94	1qz3	A	101	109	AKDGRAVVF	HHHHTSEEE	aaaalbxbb
1sbp_*_14	1sbp	-	29	37	KQETGDNVV	HHHHS-EEE	aaaavxbbb
1sei_A_113	1sei	A	116	124	ARQKGTGGE	HHHHT--EE	aaaavbbeb
1toa_A_203	1toa	A	206	214	SRAYGFEVK	HHHHT-EEE	aaaavbbbb
1uad_A_139	1uad	A	146	154	AEQWNVNYV	HHHHT-EEE	aaaavbxbb
1urs_A_40	1urs	A	54	62	AKAHGDKVI	HHHH--EEE	aaaagxxbb
1vhm_A_92	1vhm	A	97	105	AVARNQVQR	HHHHTS-EE	aaaalbpbb
1vjo_A_169	1vjo	A	173	181	CREFGTLLL	HHHHT-EEE	aaaavbxxb
2bce_*_128	2bce	-	131	139	ATRGNVIVV	HHHHT-EEE	aaaalbxbb
2fok_A_528	2fok	A	536	544	NHITNCNGA	HHHH--EEE	aaaavxxbb
3pfk_*_227	3pfk	-	235	243	QEATGFETR	HHHH---EE	aaaavxxbb
4pga_A_297	4pga	A	297	304	DDKNDWVV.	HHHHT-EE.	aaaalxbb.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a99_A_302	1a99	A	PUT1,4-DIAMINOBUTANE	Y - 314
1amf_*_14	1amf	*	MOOMOLYBDATE ION	A - 37
1g3q_A_182	1g3q	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 197
1g3q_A_182	1g3q	A	ADPADENOSINE-5'-DIPHOSPHATE	P - 198
1g8t_A_79	1g8t	A	SULSULFATE ANION	D - 86
1g8t_A_79	1g8t	A	SULSULFATE ANION	R - 87
1g8t_A_79	1g8t	A	MO5MAGNESIUM ION, 5 WATERS COORDINATED	R - 87
1g8t_A_79	1g8t	A	SULSULFATE ANION	G - 88
1g8t_A_79	1g8t	A	MO5MAGNESIUM ION, 5 WATERS COORDINATED	G - 88
1g8t_A_79	1g8t	A	SULSULFATE ANION	H - 89
1g8t_A_79	1g8t	A	MO5MAGNESIUM ION, 5 WATERS COORDINATED	H - 89
1geg_A_112	1geg	A	GLCGLUCOSE	Q - 119
1geg_A_112	1geg	A	GLCGLUCOSE	E - 123
1geg_A_112	1geg	A	GLCGLUCOSE	K - 127
1geg_A_112	1geg	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 137
1gs5_A_161	1gs5	A	NLGN-ACETYL-L-GLUTAMATE	A - 161
1gs5_A_161	1gs5	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	A - 161
1gs5_A_161	1gs5	A	MGMAGNESIUM ION	A - 161
1gs5_A_161	1gs5	A	NLGN-ACETYL-L-GLUTAMATE	D - 162
1gs5_A_161	1gs5	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	D - 162
1gs5_A_161	1gs5	A	MGMAGNESIUM ION	D - 162
1gs5_A_161	1gs5	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	L - 179
1gs5_A_161	1gs5	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	S - 180
1h5q_A_48	1h5q	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 48
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	D - 12
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	T - 13
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	I - 16
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	F - 31
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	T - 32
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	A - 33
1j20_A_11	1j20	A	AMPADENOSINE MONOPHOSPHATE	D - 34
1j31_A_183	1j31	A	MSESELENOMETHIONINE	I - 183
1j31_A_183	1j31	A	MSESELENOMETHIONINE	R - 184
1j31_A_183	1j31	A	MSESELENOMETHIONINE	A - 185
1j31_A_183	1j31	A	MSESELENOMETHIONINE	L - 186
1j31_A_183	1j31	A	MSESELENOMETHIONINE	T - 192
1j31_A_183	1j31	A	MSESELENOMETHIONINE	I - 193
1j31_A_183	1j31	A	MSESELENOMETHIONINE	T - 194
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	W - 104
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	N - 105
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	A - 106
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 120
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	E - 121
1jj2_R_34	1jj2	R	MGMAGNESIUM ION	K - 34
1jj2_R_34	1jj2	R	MGMAGNESIUM ION	T - 54
1jj2_R_34	1jj2	R	MGMAGNESIUM ION	Q - 55
1kjn_A_89	1kjn	A	MSESELENOMETHIONINE	L - 107
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	F - 129
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 132
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	N - 133
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	A - 136
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	R - 137
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	R - 139
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	Q - 143
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	Y - 144
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 147
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 148
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 151
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	L - 152
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	L - 153
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	V - 154
1kyh_A_168	1kyh	A	MSESELENOMETHIONINE	W - 175
1kyh_A_168	1kyh	A	MSESELENOMETHIONINE	L - 179
1kyh_A_168	1kyh	A	MSESELENOMETHIONINE	T - 181
1l1e_A_77	1l1e	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	T - 78
1l1e_A_77	1l1e	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	L - 93
1l1e_A_77	1l1e	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	T - 94
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	L - 253
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	R - 254
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	L - 255
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	A - 256
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	F - 259
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	V - 261
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	V - 264
1n0w_A_253	1n0w	A	MSESELENOMETHIONINE	I - 265
1n0w_A_253	1n0w	A	EDO1,2-ETHANEDIOL	I - 265
1nhd_A_281	1nhd	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	M - 281
1nhd_A_281	1nhd	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	K - 285
1nhd_A_281	1nhd	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 310
1nhd_A_281	1nhd	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	S - 311
1o63_A_110	1o63	A	MSESELENOMETHIONINE	V - 112
1ols_B_262	1ols	B	GOLGLYCEROL	V - 262
1ore_A_72	1ore	A	AMPADENOSINE MONOPHOSPHATE	K - 88
1p0i_A_131	1p0i	A	GOLGLYCEROL	K - 131
1p0i_A_131	1p0i	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 137
1vhm_A_92	1vhm	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	G - 92
1vhm_A_92	1vhm	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	V - 93
1vhm_A_92	1vhm	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	C - 94
1vhm_A_92	1vhm	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	G - 95
1vjo_A_169	1vjo	A	MSESELENOMETHIONINE	L - 181
1vjo_A_169	1vjo	A	MSESELENOMETHIONINE	D - 183
1vjo_A_169	1vjo	A	PLPPYRIDOXAL-5'-PHOSPHATE	D - 183

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gs5_A_161	1gs5	A	NLGNLG BINDING SITE FOR CHAIN A	A - 161
1obd_A_127	1obd	A	AC3SO4 BINDING SITE FOR CHAIN A	G - 127
1obd_A_127	1obd	A	AC3SO4 BINDING SITE FOR CHAIN A	S - 128

Clusters included in this Subclass

CLUSTER: HE.1.4

CLUSTER: HE.2.13

CLUSTER: HE.3.20

CLUSTER: HE.3.74

CLUSTER: HE.4.88

For any comment or web-related incidence, send an email to the webmaster.