Information on SUBCLASS 1.2.9 |
Subclass Accession number: 5285
Subclass: 1.2.9 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 17.4 +/- 15.7 Average RMSD (Å) : 0.520 +/- 0.130 Consensus geometry
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Consensus Sequence: | XXGLp |
(φψ)-conformation: | aalbb |
Pattern: | [GPV] | [DKNQT] | [akl] | [aimv] | [kr] | [EKS] | x | [FLT] | [AEQT] | [AET] | [aekq] | [GQ] | [IL] | [efk] | [AGP] | [DHKRT] | [FLVY] | [HIMVY] | [gqrs] |
Conservation: | -0.881 | -0.199 | -0.915 | -0.768 | 0.620 | 1.181 | -1.539 | 0.278 | -0.005 | 0.259 | -0.402 | 2.117 | 2.209 | -0.547 | 0.325 | -0.605 | 0.205 | -0.321 | -1.011 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j1u_A_79 | 1j1u | A | 86 | 104 | GDYNKKVFEAMGLKAKYVY | HHHHHHHHHHTT---EEEE | aaaaaaaaaaavbxbxxbx |
1lt8_A_221 | 1lt8 | A | 228 | 246 | VKLMKEGLEAAQLKAHLMS | HHHHHHHHHTTT---EEEE | aaaaaaaaaaavxbbxxbb |
1n5d_A_39 | 1n5d | A | 42 | 60 | GQAAVKQLQAEGLSPRFHQ | HHHHHHHHHTTT---EEEE | aaaaaaaaaaavxbxxbbx |
1nh8_A_117 | 1nh8 | A | 117 | 135 | PNLVRKDLATKGIEATVIR | HHHHHHHHHHHT---EEEE | aaaaaaaaaaavbxbbxbx |
1vj7_A_211 | 1vj7 | A | 222 | 240 | VTKIKSYTTEQGLFGDVYG | HHHHHHHHHTTT---EEEE | aaaaaaaaaaavbbbbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1lt8_A_221 | 1lt8 | A | CITCITRIC ACID | T - 222 |
1lt8_A_221 | 1lt8 | A | CITCITRIC ACID | I - 223 |
1n5d_A_39 | 1n5d | A | NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | R - 41 |
Clusters included in this Subclass |
CLUSTER: HE.5.112 |