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Information on SUBCLASS 2.1.6
Subclass Accession number: 5326
Subclass: 2.1.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 12.1 +/- 17.5
Average RMSD (Å) : 0.670 +/- 0.178

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXXXXh
(φψ)-conformation: aalpbb
Pattern: [afilmpv][aegkr][adegkrst]x[DEGNQRST][afilpt]x[afgiklmv]
Conservation:-0.6640.273-0.8270.4312.096-0.209-1.084-0.016
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b4a_A_381b4a   A4552IKEMQLVKHHHTT-EEaaaalxbb
1bu8_A_311bu8   A3138PEDIDTRFHHHHT-EEaaaalxbb
1ekk_A_31ekk   A1320VRRHSPLVHHHH--EEaaaalxxb
1gny_A_1571gny   A159166FKASEANLHHHHT-EEaaaavxbb
1gpl_*_311gpl   -3138PKKINTRFHHHHT-EEaaaalxbb
1h6f_A_1101h6f   A116123FHKRGTEMHHHH--EEaaaavxbb
1hpl_A_311hpl   A3138PEKVNTRFHHHH--EEaaaalxbb
1hsk_A_1441hsk   A147154AVYMNAGAHHHHT-EEaaaalpbb
1i27_A_4861i27   A497504LKRLNPERHHHH--EEaaaalxpx
1j1y_A_41j1y   A613MEALGLKVHHHTT-EEaaaavxbx
1lzj_A_1021lzj   A109116FRLQNTTIHHHTT-EEaaaalxbb
1ogm_X_921ogm   X9299EPSIGLNMHHHHT-EEaaaavxbb
1q4t_A_301q4t   A3138DGTVGFVIHHHHT-EEaaaavxbx
1rlr_*_5011rlr   -507514AMGRRTLGHHHH--EEaaaalxbb
1rp1_*_311rp1   -3138PERIGTRFHHHHT-EEaaaavpbb
1tib_*_421tib   -4451VEKADATFHHHTT-EEaaaalxbx
1v8a_A_21v8a   A1118VRERRPLVHHHH--EEaaaalxxb
1vh5_A_201vh5   A2128VGFLDIRFHHHTT-EEaaaavxbx
1vh9_A_201vh9   A2128VAHLGIVYHHHTT-EEaaaavxbx
1xbr_A_471xbr   A5360FKELTNEMHHHH--EEaaaavxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gny_A_1571gny   A     XYPBETA-D-XYLOPYRANOSE Q - 167
1gny_A_1571gny   A     XYPBETA-D-XYLOPYRANOSE F - 169
1gny_A_1571gny   A     XYPBETA-D-XYLOPYRANOSE Q - 171
1h6f_A_1101h6f   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED K - 110
1h6f_A_1101h6f   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED E - 111
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 144
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 145
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 146
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 147
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 148
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 149
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 150
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 151
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 152
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 153
1hsk_A_1441hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 154
1i27_A_4861i27   A     ZNZINC ION I - 507
1j1y_A_41j1y   A     MGMAGNESIUM ION A - 8
1lzj_A_1021lzj   A     HGMERCURY (II) ION T - 119
1lzj_A_1021lzj   A     HGMERCURY (II) ION V - 120
1lzj_A_1021lzj   A     UDPURIDINE-5'-DIPHOSPHATE V - 120
1lzj_A_1021lzj   A     HGMERCURY (II) ION F - 121
1lzj_A_1021lzj   A     UDPURIDINE-5'-DIPHOSPHATE F - 121
1lzj_A_1021lzj   A     UDPURIDINE-5'-DIPHOSPHATE A - 122
1q4t_A_301q4t   A     4CO4-HYDROXYPHENACYL COENZYME A D - 31
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gny_A_1571gny   A AC3XYP BINDING SITE FOR CHAIN AQ - 171
1h6f_A_1101h6f   A MO6MO6 BINDING SITE FOR CHAIN AE - 111

Clusters included in this Subclass
CLUSTER: HE.1.26
CLUSTER: HE.2.33
CLUSTER: HE.2.86
CLUSTER: HE.3.235
CLUSTER: HE.3.79
CLUSTER: HE.4.258