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Information on SUBCLASS 2.1.11
Subclass Accession number: 5331
Subclass: 2.1.11 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 14.8 +/- 15.3
Average RMSD (Å) : 0.788 +/- 0.113

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXXG
(φψ)-conformation: aalpbe
Pattern: xxxxxxx[alv][aegq]xx[ALMY][fgkl]xx[GKNQ]x[egnrs][GN]xx
Conservation:-0.147-0.429-0.116-0.440-0.714-0.113-0.1650.502-0.110-0.617-0.5100.457-0.482-0.7390.1141.324-0.679-0.2953.682-0.524-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_8031a9x   A806826QDVMRQQVQKLAFELQVRGLMHHHHHHHHHHHHHHTT--EEEaaaaaaaaaaaaaaalxbexb
1ehi_A_2771ehi   A280300TKEVKQMALDAYKVLNLRGEAHHHHHHHHHHHHHHTT--EEEaaaaaaaaaaaaaaavxbGbb
1gr0_A_3121gr0   A317336VIIDAVRAAKIAKDRGIGGP.HHHHHHHHHHHHHHTT--EE.aaaaaaaaaaaaaaavbxex.
1mka_A_791mka   A83103LDAMWQLVGFYLGWLGGEGKGHHHHHHHHHHHHHHTT--SEEaaaaaaaaaaaaaaavxbexx
1oz9_A_221oz9   A2242KDKIEKWAELALSALGLNNVEHHHHHHHHHHHHHHTT--SEEaaaaaaaaaaaaaaavxblbb
1vjp_A_3161vjp   A323342LLVDLVRLGKIALDRKEFGT.HHHHHHHHHHHHHHTT--EE.aaaaaaaaaaaaaaalxxeb.
2dap_*_2702dap   -277297SQIAFGRAAHRMKQQGQSGAFHHHHHHHHHHHHHHTS--EEEaaaaaaaaaaaaaaavbbexb
3pfk_*_2583pfk   -263283LASRLGARAVELLLEGKGGRCHHHHHHHHHHHHHHTT--SEEaaaaaaaaaaaaaaavxbvbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_A_8031a9x   A     PO4PHOSPHATE ION Q - 803
1a9x_A_8031a9x   A     PO4PHOSPHATE ION Q - 806
1a9x_A_8031a9x   A     MNMANGANESE (II) ION N - 827
1a9x_A_8031a9x   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 829
1a9x_A_8031a9x   A     MNMANGANESE (II) ION Q - 829
1a9x_A_8031a9x   A     ADPADENOSINE-5'-DIPHOSPHATE A - 831
1ehi_A_2771ehi   A     MGMAGNESIUM ION R - 301
1ehi_A_2771ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 301
1ehi_A_2771ehi   A     MGMAGNESIUM ION D - 303
1ehi_A_2771ehi   A     ADPADENOSINE-5'-DIPHOSPHATE D - 303
1ehi_A_2771ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 303
1ehi_A_2771ehi   A     ADPADENOSINE-5'-DIPHOSPHATE L - 305
1gr0_A_3121gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 312
1gr0_A_3121gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 313
1gr0_A_3121gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 314
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE G - 79
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE D - 84
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE W - 87
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE Q - 88
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE V - 90
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE G - 91
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE F - 92
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE G - 103
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE R - 104
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE A - 105
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE L - 106
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 316
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 317
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 319
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 320
2dap_*_2702dap   *     API2,6-DIAMINOPIMELIC ACID N - 270
2dap_*_2702dap   *     API2,6-DIAMINOPIMELIC ACID T - 274
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1mka_A_791mka   A AC2TWO POLAR RESIDUES ARE FOUND IN THE CATALYTIC REGION OF THE ACTIVE SITE.D - 84

Clusters included in this Subclass
CLUSTER: HE.4.120