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Information on SUBCLASS 2.1.16
Subclass Accession number: 5336
Subclass: 2.1.16 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 11.8 +/- 13.4
Average RMSD (Å) : 0.660 +/- 0.114

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXhXh
(φψ)-conformation: aalpbb
Pattern: [ef]x[ALTV]x[aks][iktv][EGR][filv]x[AIV][AEFK]
Conservation:-0.3640.1590.581-1.6170.352-0.8231.489-0.390-0.3041.725-0.806
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3j_A_2811e3j   A282292VNACAREIDIKHHHHTTT-EEEaaaaaalxxbb
1kw3_B_151kw3   B2131FLTKSVGLMAAHHHHTT--EEEaaaaaagxxxa
1s96_A_861s96   A90100EQVLATGVDVFHHHHTTT-EEEaaaaaavxxbx
1uuf_A_2791uuf   A280290FNLIMKRRAIAHHHHTTT-EEEaaaaaalxbbb
1vgy_A_321vgy   A3242ERLHKIGFAAEHHHHTTT-EEEaaaaaavxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1s96_A_861s96   A     MSESELENOMETHIONINE R - 86
1s96_A_861s96   A     MSESELENOMETHIONINE I - 89
1s96_A_861s96   A     MSESELENOMETHIONINE E - 90
1s96_A_861s96   A     MSESELENOMETHIONINE L - 93
1s96_A_861s96   A     UNXUNKNOWN ATOM OR ION D - 102
1vgy_A_321vgy   A     MSESELENOMETHIONINE E - 32
1vgy_A_321vgy   A     MSESELENOMETHIONINE R - 33
1vgy_A_321vgy   A     MSESELENOMETHIONINE L - 34
1vgy_A_321vgy   A     MSESELENOMETHIONINE H - 35
1vgy_A_321vgy   A     MSESELENOMETHIONINE E - 42

Clusters included in this Subclass
CLUSTER: HE.5.159