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Information on SUBCLASS 2.1.17
Subclass Accession number: 5337
Subclass: 2.1.17 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 9.1 +/- 10.3
Average RMSD (Å) : 0.875 +/- 0.206

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hhchXh
(φψ)-conformation: aalpbb
Pattern: xxx[DNPR]x[AIL][DN][ILTV]x[CLTV]x
Conservation:-0.495-1.4100.910-0.380-0.6280.3752.1400.364-0.724-0.151-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hn0_A_2831hn0   A288297SDFDALNIHT.HHHHTT--EE.aaaaaalxbx.
1poc_*_771poc   -8696MYFNLIDTKCYHHHHTS---EEaaaaaalxbbb
1sox_A_2581sox   A261271ALSPAADVLLAHH-TTT--EEEaaxaaalxbbx
1v8k_A_2021v8k   A202212PRYRNLNLEVYHHHHTT--EEEaaaaaalbbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1poc_*_771poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 82
1poc_*_771poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 83
1poc_*_771poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE M - 86
1poc_*_771poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE Y - 87
1poc_*_771poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE I - 91
1sox_A_2581sox   A     MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER M - 274

Clusters included in this Subclass
CLUSTER: HE.5.239