Logo
Information on SUBCLASS 2.2.5
Subclass Accession number: 5351
Subclass: 2.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 35

Average sequence ID (%) : 12.4 +/- 15.1
Average RMSD (Å) : 0.643 +/- 0.225

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXXpXh
(φψ)-conformation: aapabb
Pattern: xx[acfilmvwy][aegknqrs][adgknrst][acfgiltv][deknrst]x[acfilvwy]x
Conservation:-0.782-0.9630.1320.1980.019-0.1092.250-1.4410.2910.406
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16pk_*_31916pk   -327336QTIGKCKSAIHHHTT-SEEEaaaaababbb
1a4i_A_2021a4i   A204213EEVNKGDILVHHHTT-SEEEaaaaaxabbb
1b35_C_1061b35   C109118KVANAFTYWRHHHTT-SEEEaaaaababbb
1brm_A_601brm   A6170EALKALDIIVHHHHT-SEEEaaaaaxabbb
1bx4_A_1531bx4   A157166MLVEKARVCYHHHHH-SEEEaaaaaxabbb
1dci_A_1731dci   A176185DLISACDIRYHHHTTSSEEEaaaaaxabbb
1e79_D_3201e79   D324333TTFAHLDATTHHGGG-SEEEaaaaababbb
1fsf_A_1901fsf   A191200GTLLDAEEVMHHHHTSS-EEaaaaaxabbb
1fzq_A_751fzq   A8089SYFENTDILIHHHTT-SEEEaaaaaxabbb
1gv8_A_1511gv8   A154163AVAKFFSASCHHHTTSSEEEaaaaaxabbb
1io2_A_461io2   A5564EILGVLDDYVHHHTT-SEEEaaaaaxabbb
1izo_A_1051izo   A124133TRWEKADEVVHHHTTSSEEEaaaaaxabbb
1j97_A_1881j97   A189198ILKEKADICIHHHTT-SEEEaaaaaxabbb
1jjf_A_2131jjf   A214223AAREKLKLLFHHHHH-SEEEaaaaaxabbb
1jsm_A_981jsm   A103112HLLSSTNHFEHHHTT-SEEEaaaaababbx
1ks9_A_581ks9   A5968DFLATSDLLLHHHHT-SEEEaaaaaxabbb
1l7d_A_2471l7d   A253262KELVKTDIAIHHHTT-SEEEaaaaaxabbb
1ml4_A_2161ml4   A217226DVIGKLDVLYHHHTT-SEEEaaaaaxabbx
1moq_*_2851moq   -287296ELLSKVEHIQHHHHH--EEEaaaaaxabbb
1mr3_F_761mr3   F8089HYYRNTEGVIHHHHT-SEEEaaaaaxabbb
1n7m_H_1831n7m   H184193ADYEKHKVYAHHHHH--EEEaaaaabaxbb
1ncw_L_1831ncw   L184193DEYERHNSYTHHHHH--EEEaaaaababbb
1nm8_A_2491nm8   A256265RSIQKSIFTVHHHHHSS-EEaaaaapabbb
1nnl_A_61nnl   A918KLFYSADAVCHHHHH-SEEEaaaaaxabbb
1nyt_A_651nyt   A6775EAFARADEL.HHHHH-SEE.aaaaapabb.
1ohe_A_2931ohe   A301310DICENAEGAIHHHHS-SSEEaaaaaxabxb
1pno_A_2971pno   A302311FIMKNASKVIHHHHT-SEEEaaaaaxabbb
1psw_A_2521psw   A257266ILIAACKAIVHHHHTSS-EEaaaaaxabbb
1qpg_*_1411qpg   -150159ELSSLADVYIHHHHT-SEEEaaaaababbb
1qpg_*_3151qpg   -323332ATVAKAKTIVHHHTT-SEEEaaaaaxabbb
1r0w_A_6071r0w   A608617EHLRKADKILHHHHT-SEEEaaaaaxabbb
1s2d_A_1291s2d   A130138MIAQGVTTI.HHHHH-SEE.aaaaaxabb.
1vfr_A_751vfr   A7584PHIKACSHVIHHHHHSSEEEaaaaaxabbb
1vpe_*_2981vpe   -306315QKLSDAKTVVHHHTT-SEEEaaaaaxabbb
3pmg_A_1403pmg   A148157QISKTIEEYAHHHHH--EEEaaaaapabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
16pk_*_31916pk   *     BIS1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER N - 338
1a4i_A_2021a4i   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 202
1a4i_A_2021a4i   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 214
1bx4_A_1531bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Y - 166
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL A - 180
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL C - 181
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL D - 182
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL I - 183
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL R - 184
1e79_D_3201e79   D     ATPADENOSINE-5'-TRIPHOSPHATE F - 326
1fzq_A_751fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 93
1izo_A_1051izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 111
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL L - 77
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL W - 78
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL W - 78
1mr3_F_761mr3   F     PDO1,3-PROPANDIOL W - 78
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL R - 79
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL H - 80
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL Y - 81
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL Y - 82
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL Y - 82
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL R - 83
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL N - 84
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL N - 84
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL T - 85
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL T - 85
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL E - 86
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL G - 87
1mr3_F_761mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE V - 91
1mr3_F_761mr3   F     EOHETHANOL I - 92
1mr3_F_761mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE D - 93
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL D - 93
1mr3_F_761mr3   F     EOHETHANOL D - 93
1nnl_A_61nnl   A     CACALCIUM ION D - 20
1nyt_A_651nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 65
1nyt_A_651nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE K - 65
1nyt_A_651nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE E - 66
1pno_A_2971pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE P - 314
1psw_A_2521psw   A     MSESELENOMETHIONINE L - 258
1psw_A_2521psw   A     MSESELENOMETHIONINE A - 261
1psw_A_2521psw   A     MSESELENOMETHIONINE C - 262
1psw_A_2521psw   A     MSESELENOMETHIONINE K - 263
1psw_A_2521psw   A     MSESELENOMETHIONINE A - 264
1psw_A_2521psw   A     MSESELENOMETHIONINE T - 267
1psw_A_2521psw   A     MSESELENOMETHIONINE N - 268
1qpg_*_3151qpg   *     MAPMAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE N - 334
1vfr_A_751vfr   A     FMNFLAVIN MONONUCLEOTIDE H - 76
1vpe_*_2981vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 317

Clusters included in this Subclass
CLUSTER: HE.2.122
CLUSTER: HE.3.196
CLUSTER: HE.3.28
CLUSTER: HE.4.233
CLUSTER: HE.5.42