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Information on SUBCLASS 2.2.6
Subclass Accession number: 5352
Subclass: 2.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 34

Average sequence ID (%) : 11.6 +/- 14.2
Average RMSD (Å) : 0.679 +/- 0.209

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXhXXX
(φψ)-conformation: aapabb
Pattern: x[acfikltv][adekqrst]x[acfklmv][dehkpqrs]xxxx
Conservation:-1.3890.4790.453-0.4821.6120.379-0.810-1.3981.0160.139
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_4411a8i   -445454CIAGSHAVNGHHHT-SEEEEaaaababbbx
1bkj_A_691bkj   A6978YVESAAEFLVHHHHSSEEEEaaaaxabbbb
1c7n_A_1831c7n   A192201IVLKSDLMLWHHHHSS-EEEaaaabaxxbb
1cbu_A_1041cbu   A121130ACQRCPAKVVHHHH--SEEEaaaaxaxxxb
1ef8_A_841ef8   A91100MIQKFPKPIIHHHH-SS-EEaaaaxabxbb
1fc4_A_1371fc4   A142151GVRLCKAKRYHHHTS-SEEEaaaaxapxbb
1gg4_A_831gg4   A94103VRQQVPARVVHHHHS--EEEaaaabapxxb
1gv9_A_1861gv9   A190198GATQALASC.HHHH-SEEE.aaaapabbb.
1hnu_A_941hnu   A107116AFIKHSKVLIHHHH--SEEEaaaapaxxxb
1inl_A_2121inl   A222231ISKVFPITRVHHHH-SEEEEaaaaxabbbx
1j1u_A_171j1u   A2231EVLKKDEKSAHHHHSSSEEEaaaaxabbbb
1kfs_A_3361kfs   A345354KLEKAPVFAFHHHHSSSEEEaaaaxabbxb
1l5w_A_3901l5w   A393400WAKLAVVH..HHHH-SEE..aaaaxabb..
1li4_A_3081li4   A311320LNENAVEKVNHHHH-SEEEEaaaaxabbbx
1lxj_A_231lxj   A3241KIRESPLKSTHHHTSSSEEEaaaaxaxxbb
1ma3_A_1711ma3   A180189EAKHCDAFMVHHHH-SEEEEaaaaxabbbx
1nnl_A_2031nnl   A205213VKDNAKWYI.HHHH-SEEE.aaaaxabbb.
1nox_*_751nox   -7584HVEEAPVVLVHHHHSSEEEEaaaaxabbxb
1np3_A_661np3   A6978AVAAADVVMIHHHT-SEEEEaaaababbxx
1nzy_A_741nzy   A95104KIIRVKRPVLHHHH-SS-EEaaaapabxbb
1ozh_A_2671ozh   A271280LLQLADLVICHHHH-SEEEEaaaapabbbx
1ozn_A_2691ozn   A274282WLQKFRGSS.HHHH--SEE.aaaapaxbb.
1pox_A_1991pox   A208217TLLAAERPLIHHHH-SSEEEaaaaxabxbb
1psz_A_731psz   A7887KTSEADLIFYHHHH-SEEEEaaaaxabbbb
1pvd_A_1941pvd   A207216LVKDAKNPVIHHHH-SSEEEaaaaxabxbb
1qmg_A_1861qmg   A189198TISGSDLVLLHHHT-SEEEEaaaaxabbbx
1qwi_A_1261qwi   A127136VSQVLKAEITHHHH--SEEEaaaaxaxxbb
1rkq_A_2261rkq   A228237MIEYAGVGVAHHHHSSEEEEaaaaxabbbb
1s5p_A_1971s5p   A203212ALSMADIFIAHHHH-SEEEEaaaaxabbbb
1tfr_*_1011tfr   -115124LKAYMPYIVMHHHHSSSEEEaaaaxabxbx
1uds_A_1771uds   A179188EDSAAQVDMNHHHT-SEEEEaaaaxabbbb
1upa_A_2021upa   A212221LLAEAKHPVLHHHH-SSEEEaaaaxabxbb
1vhv_A_171vhv   A2231AVREADEVYVHHHH-SEEEEaaaaxabbbb
1vi9_A_1361vi9   A136143GLPASDII..HHHH-SEE..aaaaxabb..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bkj_A_691bkj   A     FMNFLAVIN MONONUCLEOTIDE Y - 69
1c7n_A_1831c7n   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 203
1fc4_A_1371fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 138
1fc4_A_1371fc4   A     MSESELENOMETHIONINE I - 139
1fc4_A_1371fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 139
1fc4_A_1371fc4   A     MSESELENOMETHIONINE Y - 153
1gg4_A_831gg4   A     MSESELENOMETHIONINE F - 87
1gg4_A_831gg4   A     MSESELENOMETHIONINE L - 90
1gg4_A_831gg4   A     MSESELENOMETHIONINE A - 91
1gg4_A_831gg4   A     MSESELENOMETHIONINE V - 94
1hnu_A_941hnu   A     REOPERRHENATE F - 97
1hnu_A_941hnu   A     REOPERRHENATE N - 101
1hnu_A_941hnu   A     EDO1,2-ETHANEDIOL F - 108
1hnu_A_941hnu   A     EDO1,2-ETHANEDIOL I - 109
1j1u_A_171j1u   A     TYRTYROSINE Y - 32
1j1u_A_171j1u   A     TYRTYROSINE I - 33
1j1u_A_171j1u   A     TYRTYROSINE G - 34
1j1u_A_171j1u   A     TYRTYROSINE F - 35
1kfs_A_3361kfs   A     ZNZINC ION D - 355
1kfs_A_3361kfs   A     MGMAGNESIUM ION D - 355
1kfs_A_3361kfs   A     ZNZINC ION T - 356
1kfs_A_3361kfs   A     MGMAGNESIUM ION T - 356
1kfs_A_3361kfs   A     ZNZINC ION E - 357
1kfs_A_3361kfs   A     MGMAGNESIUM ION E - 357
1lxj_A_231lxj   A     MSESELENOMETHIONINE F - 25
1lxj_A_231lxj   A     MSESELENOMETHIONINE V - 26
1lxj_A_231lxj   A     MSESELENOMETHIONINE I - 29
1lxj_A_231lxj   A     MSESELENOMETHIONINE I - 33
1nox_*_751nox   *     FMNFLAVIN MONONUCLEOTIDE H - 75
1nzy_A_741nzy   A     CACALCIUM ION F - 82
1nzy_A_741nzy   A     BCA4-HYDROXYBENZOYL COENZYME A F - 82
1nzy_A_741nzy   A     CACALCIUM ION A - 85
1nzy_A_741nzy   A     BCA4-HYDROXYBENZOYL COENZYME A A - 85
1nzy_A_741nzy   A     CACALCIUM ION A - 86
1nzy_A_741nzy   A     BCA4-HYDROXYBENZOYL COENZYME A A - 86
1nzy_A_741nzy   A     CACALCIUM ION W - 89
1nzy_A_741nzy   A     BCA4-HYDROXYBENZOYL COENZYME A W - 89
1nzy_A_741nzy   A     CACALCIUM ION H - 90
1nzy_A_741nzy   A     BCA4-HYDROXYBENZOYL COENZYME A H - 90
1nzy_A_741nzy   A     CACALCIUM ION P - 102
1pox_A_1991pox   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 218
1pox_A_1991pox   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 219
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE M - 186
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE W - 187
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE L - 198
1uds_A_1771uds   A     PO4PHOSPHATE ION D - 180
1uds_A_1771uds   A     PO4PHOSPHATE ION N - 188
1upa_A_2021upa   A     MSESELENOMETHIONINE V - 220
1vhv_A_171vhv   A     MSESELENOMETHIONINE V - 29
1vhv_A_171vhv   A     MSESELENOMETHIONINE Y - 30
1vhv_A_171vhv   A     MSESELENOMETHIONINE V - 31
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1kfs_A_3361kfs   A EXOEXONUCLEASE ACTIVE SITE.D - 355
1kfs_A_3361kfs   A EXOEXONUCLEASE ACTIVE SITE.E - 357

Clusters included in this Subclass
CLUSTER: HE.2.32
CLUSTER: HE.3.21