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Information on SUBCLASS 2.2.8
Subclass Accession number: 5354
Subclass: 2.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 11.3 +/- 15.0
Average RMSD (Å) : 0.625 +/- 0.184

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXhXXX
(φψ)-conformation: aapabb
Pattern: [adeknrst][afilmv]x[ADEGKNQRS]x[acflv][dehknpr]x[AFGIKLMTV]x
Conservation:0.0502.214-0.1820.875-0.785-0.3540.077-1.392-0.7450.242
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dus_A_681dus   A7280ALADEVKST.HHGGGSSEE.aaaaababb.
1fl2_A_3651fl2   A373382DLAGIVEHVTHHHTTBSEEEaaaaaxabbb
1gv4_A_2861gv4   A294303KISREVKSITHHHTT-SEEEaaaaababbb
1gvh_A_3051gvh   A310319ELGQSLPRFTHHHHTSSSEEaaaaaxabbb
1hdi_A_2201hdi   A225234NMLDKVNEMIHHHTT-SEEEaaaaaxabbx
1inl_A_2121inl   A221230RISKVFPITRHHHHH-SEEEaaaaaxabbb
1j97_A_1721j97   A173182SMFKKAGLKIHHHHH-SEEEaaaaaxabbb
1jax_A_581jax   A6069DAAEACDIAVHHHHH-SEEEaaaaaxabbb
1l3i_A_461l3i   A5059ELAGRVRRVYHHHTTSSEEEaaaaababbb
1moq_*_3801moq   -380389SLVRESDLALHHHHHSSEEEaaaaaxabbb
1ofu_A_1411ofu   A153162ALAESVDSLIHHHTT-SEEEaaaaababbx
1qis_A_2381qis   A242251AFAAMHKELIHHHTT-S-EEaaaaababbb
1qpb_A_1241qpb   A128137MSANISETTAHHHTT-SEEEaaaaababbb
1rkq_A_2261rkq   A227236AMIEYAGVGVHHHHHSSEEEaaaaaxabbb
1rku_A_1571rku   A158167TMLSEAHAGIHHHHHSSEEEaaaaaxabbb
1uir_A_2051uir   A212221TVREAFRYVRHHHTT-SEEEaaaaababbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dus_A_681dus   A     MSESELENOMETHIONINE V - 68
1dus_A_681dus   A     MSESELENOMETHIONINE I - 69
1dus_A_681dus   A     MSESELENOMETHIONINE G - 70
1dus_A_681dus   A     MSESELENOMETHIONINE I - 71
1dus_A_681dus   A     MSESELENOMETHIONINE T - 80
1j97_A_1721j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE M - 174
1l3i_A_461l3i   A     SAHS-ADENOSYL-L-HOMOCYSTEINE G - 46
1l3i_A_461l3i   A     MSESELENOMETHIONINE V - 47
1l3i_A_461l3i   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 47
1l3i_A_461l3i   A     MSESELENOMETHIONINE E - 50
1l3i_A_461l3i   A     MSESELENOMETHIONINE L - 51
1l3i_A_461l3i   A     MSESELENOMETHIONINE A - 52
1l3i_A_461l3i   A     MSESELENOMETHIONINE R - 54
1l3i_A_461l3i   A     MSESELENOMETHIONINE Y - 59
1l3i_A_461l3i   A     MSESELENOMETHIONINE A - 60
1l3i_A_461l3i   A     MSESELENOMETHIONINE I - 61
1l3i_A_461l3i   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 61
1moq_*_3801moq   *     GLPGLUCOSAMINE 6-PHOSPHATE L - 381
1ofu_A_1411ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 143
1qis_A_2381qis   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 254
1qis_A_2381qis   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 255
1rku_A_1571rku   A     EDO1,2-ETHANEDIOL T - 158
1rku_A_1571rku   A     EDO1,2-ETHANEDIOL M - 159
1rku_A_1571rku   A     MGMAGNESIUM ION F - 169

Clusters included in this Subclass
CLUSTER: HE.1.64
CLUSTER: HE.3.78
CLUSTER: HE.4.271
CLUSTER: HE.5.79