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Information on SUBCLASS 2.2.9
Subclass Accession number: 5355
Subclass: 2.2.9 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 13.1 +/- 15.7
Average RMSD (Å) : 0.562 +/- 0.243

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXhcXh
(φψ)-conformation: aapabb
Pattern: [hilmvy][ADEKNQRT]x[AIKLM][cfgly][dgknqrs]x[ACGILMVY][ADKNQ]x[FILMV][filtvy]x
Conservation:0.0070.385-0.2180.230-0.768-0.366-0.715-0.2141.847-1.2462.137-0.115-0.963
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16pk_*_22416pk   -227239LDNMLQRIDYLLIHHHHGGG-SEEEEaaaaaaababbbb
1duv_G_891duv   G93105ARVLGRMYDGIQYHHHHTTT-SEEEEaaaaaaababbbb
1edq_A_3751edq   A375387YNVAQNSMDHIFLHHHHGGG-SEEEEaaaaaaababbxx
1iir_A_2951iir   A295307HQVLFGRVAAVIHHHHHGGGSSEEEEaaaaaaababbbb
1jje_A_1761jje   A183195LKSKYGKAKLVVPHHHHTTT-SEEEEaaaaaaaxabbbx
1li4_A_2621li4   A262274MDEACQEGNIFVTHHHHTTT-SEEEEaaaaaaaxabbbb
1m2x_A_2391m2x   A249261IQQKFSGAQYVVAHHHHTTT-SEEEEaaaaaaapabbbx
1puj_A_121puj   A1729VTEKLKLIDIVYEHHHHGGG-SEEEEaaaaaaababbbx
1qpg_*_2181qpg   -221233IDNLLDKVDSIIIHHHHTTT-SEEEEaaaaaaaxabbbb
1qzo_A_1701qzo   A170182IAQISRHLDFISLHHHHTTT-SEEEEaaaaaaaxabbxx
1v6s_A_1991v6s   A202214IESLLPRIDRLLIHHHHGGG-SEEEEaaaaaaababbbb
1vjd_A_2201vjd   A223235INNMLDKVNEMIIHHHHTTT-SEEEEaaaaaaaxabbxb
2nac_A_2412nac   A241253REDMYPVCDVVTLHHHHGGG-SEEEEaaaaaaababbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1duv_G_891duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE R - 106
1m2x_A_2391m2x   A     GOLGLYCEROL V - 239
1puj_A_121puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 30

Clusters included in this Subclass
CLUSTER: HE.6.15