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PDB code:

Information on SUBCLASS 2.3.2

Subclass Accession number: 5364 Subclass: 2.3.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 20 Average sequence ID (%) : 11.7 +/- 14.5 Average RMSD (Å) : 0.680 +/- 0.196 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8y_*_23	1a8y	-	26	34	VFKKYEVLA	HHHH-SEEE	aaaababbb
1coz_A_15	1coz	A	24	32	AKQLGDYLV	HHTTSSEEE	aaaababbb
1dp4_A_196	1dp4	A	203	211	VRRKGRVIY	HHHH-SEEE	aaaabaxbb
1ff9_A_59	1ff9	A	65	73	EVAKHDLVI	HHTTSSEEE	aaaababbb
1iej_A_148	1iej	A	152	160	VAKFFSASC	HHHHSSEEE	aaaaxabbb
1iib_A_44	1iib	A	47	55	KGQNADVVL	HHTT-SEEE	aaaaxabbb
1iq7_A_480	1iq7	A	480	488	FDEYFSEGC	HHHHSSEEE	aaaaxabeb
1j23_A_64	1j23	A	71	79	LKEAYSRPI	HHHH-SEEE	aaaababxb
1jdp_A_199	1jdp	A	206	214	IQASERVVI	HHHH-SEEE	aaaababbb
1js1_X_93	1js1	X	100	108	MGCYCDIIG	HHHT-SEEE	aaaababbb
1ojr_A_191	1ojr	A	200	208	EMQKHSLVL	HHTT-SEEE	aaaababbx
1plq_*_141	1plq	-	151	159	LSQLSDSIN	HHTT-SEEE	aaaababbx
1q5d_A_29	1q5d	A	35	43	LREATPIFY	HHHH-SEEE	aaaababbx
1rwz_A_135	1rwz	A	145	153	ADKISDQVI	HHTT-SEEE	aaaababbb
1rwz_A_8	1rwz	A	18	26	IVALVSEAR	HHTT-SEEE	aaaababbx
1tpl_A_237	1tpl	A	244	252	MFSYADGCT	HHHTSSEEE	aaaababbb
1uj2_A_143	1uj2	A	145	153	VRDLFQMKL	HHHH-SEEE	aaaaxabbb
1vj5_A_134	1vj5	A	143	151	LKMHFDFLI	HHTTSSEEE	aaaababbb
2cev_A_203	2cev	A	214	222	LKERTDGVH	HHTT-SEEE	aaaNbabbx
2dnj_A_19	2dnj	A	28	36	IVRRYDIVL	HHHT-SEEE	aaaababbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1coz_A_15	1coz	A	CTPCYTIDINE-5'-TRIPHOSPHATE	G - 16
1coz_A_15	1coz	A	CTPCYTIDINE-5'-TRIPHOSPHATE	H - 17
1coz_A_15	1coz	A	CTPCYTIDINE-5'-TRIPHOSPHATE	L - 20
1coz_A_15	1coz	A	CTPCYTIDINE-5'-TRIPHOSPHATE	R - 23
1js1_X_93	1js1	X	PO4PHOSPHATE ION	R - 110
1ojr_A_191	1ojr	A	ZNZINC ION	W - 209
1ojr_A_191	1ojr	A	PO4PHOSPHATE ION	W - 209
1ojr_A_191	1ojr	A	2HADIHYDROXYACETONE	W - 209
2cev_A_203	2cev	A	MNMANGANESE (II) ION	D - 226
2dnj_A_19	2dnj	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 19
2dnj_A_19	2dnj	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 20
2dnj_A_19	2dnj	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 21

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
2cev_A_203	2cev	A	MNAMN 301 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, A BRIDGING WATER HOH1 AND A TERMINAL WATER HOH MN 302 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH1	D - 226

Clusters included in this Subclass

CLUSTER: HE.3.32

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