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Information on SUBCLASS 2.4.1
Subclass Accession number: 5387
Subclass: 2.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 107

Average sequence ID (%) : 16.1 +/- 16.8
Average RMSD (Å) : 0.579 +/- 0.240

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXcXhX
(φψ)-conformation: aalabb
Pattern: xx[afgilmwy]x[adegknqrst]x[degknqrs]x[afgilmvwy]xx
Conservation:-0.496-0.637-0.010-0.5590.199-0.3992.233-0.7891.560-0.247-0.855
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a79_A_471a79   A5161LYLINLGWLEVHHHHHHT-EEEaaaaaavabbb
1aky_*_1861aky   -189199DFYKKTGIWAGHHHHHHT-EEEaaaaaavaxbb
1b6a_*_4291b6a   -433443KNLCDLGIVDPHHHHHTTSEEEaaaaaavabbx
1bc8_C_561bc8   C6474RYYYVKNIIKKHHHHHHTSEEEaaaaaavabbx
1bja_A_461bja   A5464GVLIKKGLVEKHHHHTTTSEEEaaaaaavabbx
1bpy_A_2081bpy   A216226EQLQKVHFITDHHHHTTTSEEEaaaaaavaxab
1c44_A_901c44   A91101QSAFFQGKLKIHHHHHTT--EEaaaaaavabbb
1coy_*_2321coy   -234244AQAAATGKLTIHHHHHTT-EEEaaaaaavabbb
1dxy_*_2401dxy   -244254LSNLKSGKLAGHHHHHTTSEEEaaaaaavaxab
1e6y_B_22621e6y   B22712281RRAIEAGIISVHHHHHTTSEEEaaaaaavabbx
1ei9_A_2711ei9   A272282KAMDKAGQLVFHHHHHTT-EEEaaaaaavabbb
1ekj_A_2891ekj   A292302REGLVNKTLALHHHHHTTS-EEaaaaaalabbb
1f0k_A_2881f0k   A294304LPLEKAGAAKIHHHHHTTSEEEaaaaaavabbb
1f1z_A_2271f1z   A233242RALTANGFIK.HHHHHTTSEE.aaaaaavabb.
1f6d_A_3141f6d   A314323PEAVTAGTVR.HHHHHHTSEE.aaaaaavabb.
1f7u_A_2991f7u   A307317DLFKEKGLTHEHHHHHTT-EEEaaaaaavaxbx
1fnn_A_3311fnn   A339349NDLREKGIVETHHHHHTTSSEEaaaaaavabbb
1fp1_D_811fp1   D90100RLLASYSVLTSHHHHHTTSEEEaaaaaavabbb
1fp2_A_681fp2   A7686RYLAHNGFFEIHHHHHTTSEEEaaaaaagabbx
1fx7_A_381fx7   A4656SRMERDGLLRVHHHHHTTSEEEaaaaaavabbx
1g3s_A_381g3s   A4656ARMERDGLVVVHHHHHTTSEEEaaaaaavabbx
1gdh_A_2461gdh   A250260VAALEAGRLAYHHHHHHTSEEEaaaaaavabab
1ghe_A_541ghe   A5464KADIAAGSLLLHHHHHHTSEEEaaaaaavabbb
1gmx_A_91gmx   A1323HQKLQEKEAVLHHHHHTT--EEaaaaaavabbb
1gvj_A_3861gvj   A394404RYYYDKNIIHKHHHHHTTSEEEaaaaaalabbx
1h3f_A_3841h3f   A388398RRLIQNRGLRLHHHHHTT-EEEaaaaaalabbb
1h5r_A_2001h5r   A205215RIYLEQGRLSVHHHHHHT-EEEaaaaaavaxxb
1hc7_A_101hc7   A2030EVIQKAELADYHHHHHTTSEEEaaaaaalabbx
1hk8_A_521hk8   A5565MKAHESGIIHVHHHHHHTSEEEaaaaaavabbx
1hw1_A_451hw1   A5363QRLARDGWLTIHHHHHTTSEEEaaaaaavabbb
1i5z_A_1801i5z   A188198KMLEDQNLISAHHHHHTTSEEEaaaaaalabbb
1ii7_A_941ii7   A96106NLLEDFGLVYVHHHHHTTS-EEaaaaaavabbx
1iin_A_2001iin   A205215RIYMEQGRLSVHHHHHTT-EEEaaaaaavabbb
1ikt_A_891ikt   A90100QKAFFSGRLKAHHHHHTTSSEEaaaaaavabbb
1in4_A_2981in4   A299309PYLLQAGFLARHHHHHTTSEEEaaaaaavabbb
1j09_A_861j09   A94104EELLKRGWAYRHHHHHHTSEEEaaaaaavabbx
1j3b_A_211j3b   A2636EHTLLRGEGLLHHHHHTTS-EEaaaaaavabbx
1j4a_A_2421j4a   A246256IRGLDSGKIFGHHHHHHTSEEEaaaaaavaxab
1j75_A_1421j75   A150160YRLKKEDRVSSHHHHHTTSEEEaaaaaalabbb
1j8f_A_1471j8f   A153163RLLKDKGLLLRHHHHHTT-EEEaaaaaavaxab
1jgs_A_681jgs   A7686DRLVCKGWVERHHHHHTTSEEEaaaaaavabbb
1jhf_A_401jhf   A4858KALARKGVIEIHHHHHTTSEEEaaaaaavabbb
1jhj_A_131jhj   A1424KQLERTGTVREHHHHHTTSEEEaaaaaavabbx
1jj2_O_371jj2   O4151RELVDEGAIQAHHHHHTTSEEEaaaaaavabbb
1jkx_A_1621jkx   A181191ISWFADGRLKMHHHHHTT-EEEaaaaaavabbb
1jla_A_281jla   A3949TEMEKEGKISKHHHHHHTSEEEaaaaaavabbx
1jv1_A_871jv1   A95105LFQISQNKVAVHHHHHTT-EEEaaaaaalabbb
1k1x_A_631k1x   A7080RSLIKRGQLEIHHHHHTT-EEEaaaaaavabbx
1k6d_A_621k6d   A6272GPLIVNGRVRKHHHHHTT-EEEaaaaaavabab
1k6d_A_821k6d   A8595GRRMISGEMDVHHHHHTTSSEEaaaaaavabxb
1kgd_A_7881kgd   A792802MQDISNNEYLEHHHHHTT-EEEaaaaaalabab
1l1l_A_721l1l   A8696YKLIYGLGATPHHHHHTTSEEEaaaaaavabbx
1li5_A_1181li5   A126136EQLIAKGHAYVHHHHHTTSEEEaaaaaavabbx
1lj9_A_581lj9   A6676KRLEEQGFIYRHHHHHTTSEEEaaaaaavabbb
1lml_*_2741lml   -275285PFFEDARIVANHHHHHTT-EEEaaaaaavabbb
1lml_*_3561lml   -360370AIFQDLGFYQAHHHHHTTS-EEaaaaaavabbx
1lox_*_2591lox   -266276EKELKAGTLFEHHHHHTT-EEEaaaaaavaxbb
1lva_A_4791lva   A487497EEWSREGRLQLHHHHHTTSEEEaaaaaavabbx
1lva_A_5471lva   A555565HYLVREGVLVKHHHHHTTSEEEaaaaaavabbx
1lva_A_6061lva   A614624EYLDQVKFTRRHHHHHTTSEEEaaaaaalabbx
1lvg_A_581lvg   A6272QRDIAAGDFIEHHHHHHT-EEEaaaaaavabab
1m2k_A_781m2k   A8494AELERLGVLKCHHHHHTT-EEEaaaaaavaxab
1ma3_A_801ma3   A8696AELERMGIVKAHHHHHTTSEEEaaaaaavaxab
1mkm_A_341mkm   A4252VVLEEKGFVLRHHHHHTTSEEEaaaaaavabbb
1mp9_A_1681mp9   A180189DKLVELDCVK.HHHHHTT-EE.aaaaaalabb.
1mu2_A_281mu2   A3949EKMEKEGQLEEHHHHHHTSEEEaaaaaagabbx
1mv8_A_511mv8   A5666QQGRQTGRLSGHHHHHTT-EEEaaaaaavabbb
1mx3_A_2721mx3   A276286AQALKEGRIRGHHHHHHTSEEEaaaaaavabab
1mzb_A_511mzb   A5969TQFEAAGLVVRHHHHHHTSEEEaaaaaavabbb
1n8q_A_6001n8q   A602612ADLIKRGMAIEHHHHHTTSEEEaaaaaavabbx
1nzj_A_821nzj   A90100AWLHEQGLSYYHHHHHTT-EEEaaaaaavabbx
1o7f_A_2371o7f   A245255QVLLEDGVLNHHHHHHTTSEEEaaaaaavabbx
1ofu_X_1101ofu   X118128CEALRLGRSHTHHHHHHT-EEEaaaaaavabab
1olt_A_4011olt   A408418APLAKDGLVDVHHHHHTTSEEEaaaaaavabxb
1on2_A_361on2   A4454QKLDKDEYLIYHHHHHTTSEEEaaaaaavabbx
1ooy_A_601ooy   A6171GLLLQSKQIKRHHHHHTT-EEEaaaaaalabab
1oyw_A_4661oyw   A474484RQLIHLGLVTQHHHHHTTSEEEaaaaaavabbb
1p4x_A_681p4x   A7282KVLVKHSYISKHHHHHTTS-EEaaaaaavabbb
1p99_A_1461p99   A154164KLLEAAGLIKLHHHHHTTS-EEaaaaaavabbb
1poi_A_561poi   A5969DMLIGNGRVKAHHHHHTT-EEEaaaaaalabab
1pue_E_2271pue   E235245RNYGKTGEVKKHHHHHHSSEEEaaaaaavabbx
1pz4_A_811pz4   A8292KEAMAQDKMEVHHHHHTTSEEEaaaaaalabbb
1q1a_A_951q1a   A101111KLFQDKDVLKRHHHHHTT-EEEaaaaaalaxab
1qbj_A_1691qbj   A177187YSLAKKGKLQKHHHHHTTSEEEaaaaaavabbx
1qf9_A_1561qf9   A161171DHYNKFDKVKIHHHHHTT-EEEaaaaaavabbx
1qop_B_3111qop   B314324AYLNSIGRADYHHHHHTTSSEEaaaaaavabbb
1qzz_A_631qzz   A7180RHLTVVGVLE.HHHHHTTSEE.aaaaaavabb.
1r0v_A_1831r0v   A187197LYLLDLGKLNLHHHHHHT-EEEaaaaaavabbx
1r13_A_851r13   A103113GVLSLQGSMLSHHHHHTTS-EEaaaaaavabbb
1reg_X_651reg   X7686WLLEDWGLIEIHHHHHTTS-EEaaaaaavabbx
1ro7_A_551ro7   A6373KHLIQNQEYETHHHHHTTS-EEaaaaaalabbb
1s3j_A_731s3j   A7383DRLEQKNLIARHHHHHTTSEEEaaaaaavabbb
1smt_A_731smt   A8191RSLRNLRLVSYHHHHHTTSEEEaaaaaavabbb
1ual_A_201ual   A2333GRAVKHNLLKVHHHHHTTSEEEaaaaaavabbb
1ub9_A_441ub9   A5262RVLERNGLVKTHHHHHTTSEEEaaaaaavabbb
1ucr_A_361ucr   A4454TALVNDEVLEYHHHHHTTSEEEaaaaaavabbb
1ufa_A_1241ufa   A129139RKAEEGGQVELHHHHHHTSEEEaaaaaavabbb
1v4v_A_3061v4v   A306316PEGLKAGILKLHHHHHHTSEEEaaaaaavabbx
1vrt_A_281vrt   A3949TEMEKEGKISKHHHHHTTSEEEaaaaaavabbp
1xgs_A_2461xgs   A254264KTLEKAGAIYGHHHHHHTSEEEaaaaaavabbx
1zin_*_1811zin   -184194DFYEQKGYLRNHHHHHHT-EEEaaaaaavaxbx
2fok_A_1042fok   A112122RWAHALGFIEYHHHHHTTSEEEaaaaaavabbb
2fok_A_2222fok   A232242GWLDKLGLVKQHHHHHTTSEEEaaaaaavabbx
2nac_A_2902nac   A294304ARALESGRLAGHHHHHTTSEEEaaaaaavabae
3mbp_*_2103mbp   -214224EAAFNKGETAMHHHHHTTSEEEaaaaaavabab
3mbp_*_673mbp   -6877GGYAQSGLLA.HHHHHTT-EE.aaaaaavabx.
3thi_A_683thi   A6978SHFVDAGYLL.HHHHHTT-EE.aaaaaavabb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b6a_*_4291b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM Y - 444
1f6d_A_3141f6d   A     MSESELENOMETHIONINE G - 320
1f6d_A_3141f6d   A     MSESELENOMETHIONINE T - 321
1f6d_A_3141f6d   A     MSESELENOMETHIONINE V - 322
1f6d_A_3141f6d   A     MSESELENOMETHIONINE R - 323
1gmx_A_91gmx   A     ACTACETATE ION V - 9
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL V - 9
1gmx_A_91gmx   A     ACTACETATE ION A - 10
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL A - 10
1gmx_A_91gmx   A     ACTACETATE ION D - 11
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL H - 13
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL Q - 14
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL K - 15
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL Q - 17
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL E - 18
1gmx_A_91gmx   A     CSSS-MERCAPTOCYSTEINE V - 24
1gmx_A_91gmx   A     CSSS-MERCAPTOCYSTEINE D - 25
1h5r_A_2001h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE I - 200
1h5r_A_2001h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE T - 201
1hk8_A_521hk8   A     DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE H - 58
1hk8_A_521hk8   A     DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE H - 64
1hk8_A_521hk8   A     DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE V - 65
1i5z_A_1801i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE R - 180
1i5z_A_1801i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE E - 181
1i5z_A_1801i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE V - 183
1iin_A_2001iin   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE I - 200
1iin_A_2001iin   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE T - 201
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 P - 89
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 Q - 90
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 F - 93
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 F - 94
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 L - 98
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 A - 100
1in4_A_2981in4   A     ACTACETATE ION T - 310
1j3b_A_211j3b   A     PO4PHOSPHATE ION S - 21
1j3b_A_211j3b   A     PO4PHOSPHATE ION P - 22
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID L - 68
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID A - 70
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID L - 71
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID T - 72
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID R - 73
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID M - 74
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID L - 75
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID D - 76
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID R - 77
1jgs_A_681jgs   A     SAL2-HYDROXYBENZOIC ACID R - 86
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE T - 166
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE V - 169
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE Q - 170
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE E - 173
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE H - 174
1jv1_A_871jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE L - 107
1jv1_A_871jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE L - 108
1kgd_A_7881kgd   A     FMTFORMIC ACID E - 802
1kgd_A_7881kgd   A     FMTFORMIC ACID Y - 803
1kgd_A_7881kgd   A     FMTFORMIC ACID G - 804
1lva_A_4791lva   A     Y1YTTRIUM ION A - 484
1lva_A_4791lva   A     Y1YTTRIUM ION E - 487
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE E - 72
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE H - 73
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE A - 74
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE F - 76
1mzb_A_511mzb   A     ZNZINC ION H - 70
1nzj_A_821nzj   A     ZNZINC ION Y - 99
1nzj_A_821nzj   A     ZNZINC ION Y - 100
1nzj_A_821nzj   A     ZNZINC ION C - 101
1oyw_A_4661oyw   A     MSESELENOMETHIONINE W - 469
1oyw_A_4661oyw   A     MSESELENOMETHIONINE V - 470
1oyw_A_4661oyw   A     MSESELENOMETHIONINE S - 471
1oyw_A_4661oyw   A     MSESELENOMETHIONINE I - 473
1oyw_A_4661oyw   A     MSESELENOMETHIONINE R - 474
1oyw_A_4661oyw   A     MSESELENOMETHIONINE I - 477
1oyw_A_4661oyw   A     MSESELENOMETHIONINE Q - 484
1p99_A_1461p99   A     METMETHIONINE S - 147
1p99_A_1461p99   A     METMETHIONINE N - 148
1p99_A_1461p99   A     METMETHIONINE R - 151
1pz4_A_811pz4   A     PLMPALMITIC ACID A - 81
1pz4_A_811pz4   A     PLMPALMITIC ACID M - 90
1ro7_A_551ro7   A     MSESELENOMETHIONINE F - 55
1ro7_A_551ro7   A     CSFCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID Q - 58
1ro7_A_551ro7   A     MSESELENOMETHIONINE L - 75
1s3j_A_731s3j   A     MSESELENOMETHIONINE D - 73
1s3j_A_731s3j   A     MSESELENOMETHIONINE R - 74
1s3j_A_731s3j   A     MSESELENOMETHIONINE E - 76
1s3j_A_731s3j   A     MSESELENOMETHIONINE I - 81
1ufa_A_1241ufa   A     MSESELENOMETHIONINE L - 124
1v4v_A_3061v4v   A     MSESELENOMETHIONINE G - 312
1v4v_A_3061v4v   A     MSESELENOMETHIONINE I - 313
1v4v_A_3061v4v   A     MSESELENOMETHIONINE L - 314
1v4v_A_3061v4v   A     MSESELENOMETHIONINE K - 315
3mbp_*_2103mbp   *     GLCGLUCOSE Y - 210
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hk8_A_521hk8   A DG2DGT BINDING SITE FOR CHAIN AH - 64

Clusters included in this Subclass
CLUSTER: HE.1.9
CLUSTER: HE.2.6
CLUSTER: HE.3.5
CLUSTER: HE.4.213
CLUSTER: HE.4.4
CLUSTER: HE.5.49