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Information on SUBCLASS 2.4.12
Subclass Accession number: 5398
Subclass: 2.4.12 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 13.7 +/- 12.9
Average RMSD (Å) : 0.900 +/- 0.100

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXcLhX
(φψ)-conformation: aalapa
Pattern: [AI]x[DE][EQR][IMV]x[AGK][DGT][GN][L][GIL][GST]x[LT]xxx
Conservation:0.088-0.9461.7340.5770.756-0.140-0.498-0.4981.3581.922-1.126-0.140-0.7670.430-1.126-1.305-0.319
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d3v_A_2541d3v   A260276ITEEIYKTGLLSGLDIMHHHHHHHHT-EEEEEEEaaaaaaaavapabbbbb
1j1n_A_2541j1n   A254270AREQMFGGNLGGFTHDWHHHHHHHTT-EEEEEEEaaaaaaaalaxabbbbx
1lkd_A_2181lkd   A224240AFDRVDADGLITSTLGRHHHHHHTTT-EEEEEEEaaaaaaaavaxabxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j1n_A_2541j1n   A     MAW4-DEOXY-D-MANNURONIC ACID R - 255
1j1n_A_2541j1n   A     MAW4-DEOXY-D-MANNURONIC ACID D - 269
1j1n_A_2541j1n   A     MAVD-MANNURONIC ACID D - 269
1j1n_A_2541j1n   A     MAW4-DEOXY-D-MANNURONIC ACID W - 270
1j1n_A_2541j1n   A     MAVD-MANNURONIC ACID W - 270
1j1n_A_2541j1n   A     LGUL-GLUCURONIC ACID W - 270
1lkd_A_2181lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL T - 235
1lkd_A_2181lkd   A     P6GHEXAETHYLENE GLYCOL T - 235
1lkd_A_2181lkd   A     P6GHEXAETHYLENE GLYCOL S - 236
1lkd_A_2181lkd   A     FE2FE (II) ION H - 241
1lkd_A_2181lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL H - 241

Clusters included in this Subclass
CLUSTER: HE.3.238