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Information on SUBCLASS 2.5.5
Subclass Accession number: 5407
Subclass: 2.5.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 18.8 +/- 18.2
Average RMSD (Å) : 0.820 +/- 0.217

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: ppGhph
(φψ)-conformation: aagppb
Pattern: xx[aer][AGMT]x[AGKN][ikv][LY][ARST][ADENS][rs][G][al][KNPQ][ITVY]x[asv]
Conservation:-0.516-1.026-0.509-0.436-0.608-0.202-0.4980.9160.140-0.013-0.2113.505-0.0320.1450.084-0.576-0.162
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1euc_B_3611euc   B361377VHEAQNILTNSGLPITSHHHHHHHHHTT-SSEEEaaaaaaaaaaavxxbbx
1hdo_A_1261hdo   A132148HIRMHKVLRESGLKYVAHHHHHHHHHHT-SEEEEaaaaaaaaaaavxxbbx
1q74_A_161q74   A2137NGATIAHYTSRGAQVHVHHHHHHHHHHTT-EEEEaaaaaaaaaaavxxbbb
2scu_B_3542scu   B354370AELGAKKLADSGLNIIAHHHHHHHHHHT-SSEEEaaaaaaaaaaagxxbbx
3grs_*_1973grs   -199215AVEMAGILSALGSKTSLHHHHHHHHHHTT-EEEEaaaaaaaaaaagxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1euc_B_3611euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE V - 361
1euc_B_3611euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE A - 364
1euc_B_3611euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE I - 367
1hdo_A_1261hdo   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 128
1hdo_A_1261hdo   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 132
1q74_A_161q74   A     ZNZINC ION D - 16
3grs_*_1973grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 197
3grs_*_1973grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 198
3grs_*_1973grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE E - 201
3grs_*_1973grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE M - 202

Clusters included in this Subclass
CLUSTER: HE.4.180