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Information on SUBCLASS 2.6.2
Subclass Accession number: 5415
Subclass: 2.6.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 15.9 +/- 17.6
Average RMSD (Å) : 0.464 +/- 0.134

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXXXhX
(φψ)-conformation: aabpbb
Pattern: x[cdehknrw][acfilm]x[AEKQR][dehknrsw]x[dekpqs][GLTV]x[acgiltv]
Conservation:-1.260-0.7290.1290.0631.928-0.765-0.370-0.2771.786-0.373-0.131
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu8_A_851bu8   A91101KKMFQVEKVNCHHHHTT--EEEaaaaaabxbxb
1c4x_A_511c4x   A5262PDLAENFFVVAHHHHTTSEEEEaaaaaabxxbb
1cqd_A_1201cqd   A124134QKAVANQPVSVHHHHTTS-EEEaaaaaabxbxb
1ehy_A_461ehy   A5060GPLAEHYDVIVHHHHTTSEEEEaaaaaabxxbb
1gdh_A_131gdh   A1727ARARESYDVIAHHHHTTSEEEEaaaaaabxxbx
1j3v_A_181j3v   A1828GHLARRFPTLVHHHHTTS-EEEaaaaaabwbbb
1j7g_A_991j7g   A111121QKCAEKLPVSTHHHHTTS-EEEaaaaaabwbbb
1kht_A_641kht   A7989AEMAKESPVAVHHHHTTS-EEEaaaaaabxbbx
1mvl_A_351mvl   A4050HCFTEWAEVRAHHHHTTSEEEEaaaaaabxbbb
1q15_A_131q15   A1727NNIQRDFDGKGHHHHTTS-EEEaaaaaabxebb
1rku_A_731rku   A7888DWLRERFQVVIHHHHTTSEEEEaaaaaabxbbx
1vhv_A_651vhv   A6979IERAKSKSVVLHHHHTTSEEEEaaaaaabxbbb
1yal_*_1191yal   -122132LGALANQPLSVHHHHTTS-EEEaaaaaabxbxb
2dap_*_712dap   -7787PKFAQFACTVDHHHHTTSEEEEaaaaaabxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j3v_A_181j3v   A     MSESELENOMETHIONINE G - 18
1j3v_A_181j3v   A     MSESELENOMETHIONINE H - 19
1j3v_A_181j3v   A     MSESELENOMETHIONINE L - 20
1j3v_A_181j3v   A     MSESELENOMETHIONINE A - 21
1j3v_A_181j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE W - 29
1rku_A_731rku   A     EDO1,2-ETHANEDIOL V - 77
1rku_A_731rku   A     EDO1,2-ETHANEDIOL D - 78
1rku_A_731rku   A     EDO1,2-ETHANEDIOL W - 79
1rku_A_731rku   A     EDO1,2-ETHANEDIOL R - 81
1rku_A_731rku   A     EDO1,2-ETHANEDIOL E - 82
1rku_A_731rku   A     EDO1,2-ETHANEDIOL R - 83
1rku_A_731rku   A     EDO1,2-ETHANEDIOL F - 84
1rku_A_731rku   A     EDO1,2-ETHANEDIOL Q - 85
1rku_A_731rku   A     EDO1,2-ETHANEDIOL D - 91
1vhv_A_651vhv   A     MSESELENOMETHIONINE L - 80
1vhv_A_651vhv   A     MSESELENOMETHIONINE V - 81
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP T - 119
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP S - 120
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP F - 121
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP L - 122

Clusters included in this Subclass
CLUSTER: HE.3.120
CLUSTER: HE.4.227
CLUSTER: HE.4.54