Information on SUBCLASS 2.6.3 |
Subclass Accession number: 5416
Subclass: 2.6.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 14.4 +/- 16.7 Average RMSD (Å) : 0.817 +/- 0.194 Consensus geometry
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Consensus Sequence: | XpXPXX |
(φψ)-conformation: | aabpbb |
Pattern: | [flvw] | [aivy] | [agnv] | x | x | x | [HKNS] | x | [P] | [ILTV] | x | [ADPSTV] | x |
Conservation: | -0.349 | -0.205 | -0.333 | -0.555 | -0.433 | -0.540 | 0.322 | -0.590 | 3.022 | 0.344 | -0.385 | -0.298 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b16_A_202 | 1b16 | A | 202 | 213 | VAELLLSHPTQT. | HHHHHTTS--EE. | aaaaaaabxbbx. |
1ek9_A_221 | 1ek9 | A | 238 | 250 | RQAQDGHLPTLDL | HHHHGGGS-EEEE | aaaaaaaxxbbbb |
1nb2_A_59 | 1nb2 | A | 62 | 74 | LVGGATSGPVFAM | HHHHHTSS--BEE | aaaaaaaxpbxxb |
1nsq_A_62 | 1nsq | A | 65 | 77 | LVNYMNSGPVVPM | HHHHHTSS-BEEE | aaaaaaabxbbwb |
1ocv_A_48 | 1ocv | A | 54 | 66 | FYANSLKLPLAVE | HHHHHTSS--EEE | aaaaaaabwbbbb |
1sw6_A_405 | 1sw6 | A | 418 | 429 | WIVKKQNRPIQS. | HHHHGGG--EEE. | aaaaaaabxbbx. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b16_A_202 | 1b16 | A | NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT | L - 206 |
1ek9_A_221 | 1ek9 | A | MSESELENOMETHIONINE | D - 242 |
1ek9_A_221 | 1ek9 | A | MSESELENOMETHIONINE | L - 245 |
1ek9_A_221 | 1ek9 | A | MSESELENOMETHIONINE | P - 246 |
1ek9_A_221 | 1ek9 | A | MSESELENOMETHIONINE | G - 255 |
1ek9_A_221 | 1ek9 | A | MSESELENOMETHIONINE | I - 256 |
1ek9_A_221 | 1ek9 | A | MSESELENOMETHIONINE | S - 257 |
1nsq_A_62 | 1nsq | A | PHSPHOSPHONO GROUP | M - 69 |
Clusters included in this Subclass |
CLUSTER: HE.4.316 |
CLUSTER: HE.5.376 |
CLUSTER: HE.6.176 |