Information on SUBCLASS 2.4.4 |
Subclass Accession number: 543
Subclass: 2.4.4 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004190 (>75 %) SCOP : 50629 (>75 %) 50630 (>75 %) |
Number of loops: 16 Average sequence ID (%) : 27.1 +/- 23.3 Average RMSD (Å) : 0.431 +/- 0.087 Consensus geometry
|
Consensus Sequence: | XGpcXX |
(φψ)-conformation: | aellbb |
Pattern: | x | [gw] | [dehknsy] | [GNQS] | x | x |
Conservation: | -0.798 | 1.517 | -0.303 | 0.987 | -0.629 | -0.775 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a3a_A_56 | 1a3a | A | 57 | 62 | LGESIA | EETTEE | aelvbb |
1a6j_A_64 | 1a6j | A | 65 | 70 | IGNGIA | EETTEE | aelvbb |
1a6q_*_9 | 1a6q | - | 18 | 23 | QGNGLR | EETTEE | belvbb |
1d2e_A_289 | 1d2e | A | 293 | 298 | LGHSKN | EETTEE | bellbb |
1ekg_A_124 | 1ekg | A | 127 | 132 | FGSGVL | EETTEE | belvbb |
1gwy_A_146 | 1gwy | A | 151 | 156 | LGYGLR | EETTEE | aelvbb |
1i1n_A_50 | 1i1n | A | 52 | 57 | IGFQAT | EETTEE | aelvbb |
1i7p_A_148 | 1i7p | A | 151 | 156 | QGKGKF | EETTEE | aelvxb |
1j58_A_293 | 1j58 | A | 295 | 300 | ASDGHA | EETTEE | aelvbb |
1k3i_A_594 | 1k3i | A | 597 | 602 | NGGNSY | EETTEE | aevvbb |
1olr_A_11 | 1olr | A | 13 | 18 | SGNGYE | EETTEE | belvbb |
1pgu_A_301 | 1pgu | A | 307 | 312 | TGNGRI | EETTEE | aelvxb |
1pzx_A_29 | 1pzx | A | 31 | 36 | HWNGQD | EETTEE | belvbb |
1q16_A_911 | 1q16 | A | 912 | 917 | GGKGIA | EETTEE | eelvbb |
1un7_A_66 | 1un7 | A | 66 | 71 | GGYGAD | EETTEE | belvbb |
1usc_A_161 | 1usc | A | 163 | 168 | YGKGLY | EETTEE | aelvbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i1n_A_50 | 1i1n | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | I - 52 |
1i1n_A_50 | 1i1n | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | F - 54 |
1i1n_A_50 | 1i1n | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | Q - 55 |
1i1n_A_50 | 1i1n | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | A - 56 |
1i1n_A_50 | 1i1n | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | T - 57 |
1i1n_A_50 | 1i1n | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | I - 58 |
1j58_A_293 | 1j58 | A | MSESELENOMETHIONINE | V - 293 |
1j58_A_293 | 1j58 | A | MSESELENOMETHIONINE | F - 294 |
1j58_A_293 | 1j58 | A | MSESELENOMETHIONINE | A - 295 |
1j58_A_293 | 1j58 | A | MSESELENOMETHIONINE | S - 296 |
1j58_A_293 | 1j58 | A | MSESELENOMETHIONINE | H - 299 |
1j58_A_293 | 1j58 | A | MSESELENOMETHIONINE | R - 301 |
1pzx_A_29 | 1pzx | A | PLMPALMITIC ACID | V - 29 |
1usc_A_161 | 1usc | A | FMNFLAVIN MONONUCLEOTIDE | Y - 162 |
1usc_A_161 | 1usc | A | ACTACETATE ION | Y - 162 |
1usc_A_161 | 1usc | A | FMNFLAVIN MONONUCLEOTIDE | Y - 168 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1usc_A_161 | 1usc | A | AC1FMN BINDING SITE FOR CHAIN A | Y - 162 |
Clusters included in this Subclass |
CLUSTER: HA.1.16 |