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Information on SUBCLASS 2.8.4
Subclass Accession number: 5441
Subclass: 2.8.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 45.4 +/- 28.1
Average RMSD (Å) : 0.350 +/- 0.129

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: phGphX
(φψ)-conformation: aaeppa
Pattern: [EK][DKR][ES][IL][HQY][AE][IKL][F][CS][DQR][FY][G][EHQ][IV][KLV][DN][I][HLV]
Conservation:0.152-0.768-0.3670.130-0.182-0.668-1.2621.974-0.257-0.7161.1771.974-0.2400.451-1.2620.4740.730-1.340
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9n_B_231a9n   B2744KRSLYALFSQFGHVVDIVHHHHHHHHHTTS-EEEEEaaaaaaaaaaaexxabbb
1nu4_A_231nu4   A2744KKSLHAIFSRFGQILDILHHHHHHHHGGGS-EEEEEaaaaaaaaaaaexxabbb
1oia_A_231oia   A2744KKSLYAIFSQFGQILDILHHHHHHHHGGGS-EEEEEaaaaaaaaaaaexxabbx
1oo0_B_861oo0   B86103EDEIQEKFCDYGEIKNIHHHHHHHHHGGGS-EEEEEaaaaaaaaaaaexxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nu4_A_231nu4   A     MLAMALONIC ACID K - 23
1nu4_A_231nu4   A     MGMAGNESIUM ION K - 27
1nu4_A_231nu4   A     MLAMALONIC ACID K - 27
1nu4_A_231nu4   A     MLAMALONIC ACID H - 31
1nu4_A_231nu4   A     MLAMALONIC ACID Q - 39
1nu4_A_231nu4   A     MLAMALONIC ACID I - 40
1nu4_A_231nu4   A     MGMAGNESIUM ION L - 41
1nu4_A_231nu4   A     MLAMALONIC ACID L - 41
1nu4_A_231nu4   A     MGMAGNESIUM ION D - 42
1nu4_A_231nu4   A     MLAMALONIC ACID D - 42
1nu4_A_231nu4   A     MGMAGNESIUM ION I - 43
1nu4_A_231nu4   A     MLAMALONIC ACID I - 43
1nu4_A_231nu4   A     MGMAGNESIUM ION L - 44

Clusters included in this Subclass
CLUSTER: HE.4.286