ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.9.2

Subclass Accession number: 5444
Subclass: 2.9.2

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 13.3 +/- 14.6
Average RMSD (Å) : 0.533 +/- 0.197

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	ppcphX
(φψ)-conformation:	aagabb

Pattern:	[aflv]	x	[EKNQ]	x	[AEFKL]	[EKQR]	[AEQRS]	[GK]	[ekry]	[AFL]	x	[fklm]
Conservation:	-0.518	-0.763	1.246	-0.989	-1.080	1.539	0.238	1.482	-0.685	0.745	-0.789	-0.426

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bu6_O_151	1bu6	O	151	162	SRERARRGELLF	HHHHHHHT--EE	aaaaaaagabbb
1gmx_A_9	1gmx	A	12	23	AHQKLQEKEAVL	HHHHHHTT--EE	aaaaaaavabbb
1khb_A_50	1khb	A	57	68	LGQMEEEGILRR	HHHHHHHTS-EE	aaaaaaavabbx
1p4x_A_188	1p4x	A	195	206	LNNLKKQGYLIK	HHHHHHHTSSEE	aaaaaaagabxb
1poi_A_85	1poi	A	87	98	FRKWFEAGKLTM	HHHHHHHT-SEE	aaaaaaavabxb
1rhs_*_164	1rhs	-	167	178	VLENLESKRFQL	HHHHHHH--SEE	aaaaaaavabxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gmx_A_9	1gmx	A	ACTACETATE ION	V - 9
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	V - 9
1gmx_A_9	1gmx	A	ACTACETATE ION	A - 10
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	A - 10
1gmx_A_9	1gmx	A	ACTACETATE ION	D - 11
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	H - 13
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	Q - 14
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	K - 15
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	Q - 17
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	E - 18
1gmx_A_9	1gmx	A	CSSS-MERCAPTOCYSTEINE	V - 24
1gmx_A_9	1gmx	A	CSSS-MERCAPTOCYSTEINE	D - 25
1rhs_*_164	1rhs	*	CSSS-MERCAPTOCYSTEINE	V - 179
1rhs_*_164	1rhs	*	CSSS-MERCAPTOCYSTEINE	D - 180

Clusters included in this Subclass

CLUSTER: HE.2.110

CLUSTER: HE.3.139