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Information on SUBCLASS 3.1.8
Subclass Accession number: 5457
Subclass: 3.1.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.3 +/- 12.0
Average RMSD (Å) : 1.100 +/- 0.100

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXGhchh
(φψ)-conformation: aagpabb
Pattern: [TY]x[AEM]x[AIY][PR][KLT][AL]x[AEK][ANT][G][FGW][DN][GWY][AVY][GWY]xx
Conservation:0.379-0.989-0.663-0.989-0.5820.364-0.6630.119-0.745-0.175-0.2563.2440.0691.6000.313-0.4190.313-0.501-0.419
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1nwc_A_761nwc   A7997TNEVYPKLKATGWDGYWVDHHHHHHHHHHTT--SEEEEaaaaaaaaaaavpaxbbbb
1qjw_A_1421qjw   A148166TLADIRTANKNGGNYAGQFHHHHHHHHHHTT--EEEEEaaaaaaaaaaavxaxbxbb
1vhh_*_1591vhh   -159177YGMLARLAVEAGFDWVYYEHHHHHHHHHHTT-SEEEEEaaaaaaaaaaagxabbbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qjw_A_1421qjw   A     CDCADMIUM ION E - 146
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE G - 159
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE G - 160
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE N - 161
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE Y - 162
1vhh_*_1591vhh   *     ZNZINC ION E - 177

Clusters included in this Subclass
CLUSTER: HE.5.400