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Information on SUBCLASS 3.2.4
Subclass Accession number: 5461
Subclass: 3.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 13.3 +/- 14.1
Average RMSD (Å) : 0.780 +/- 0.214

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcXphX
(φψ)-conformation: aalbpbb
Pattern: [ILTV]x[adnqrst][afikltv][aflmtv][adeknqrt][aekqrst]x[DEGKRS]x[adekrst][afgipvy]x[afilptv]
Conservation:2.688-0.970-0.698-0.4280.483-0.1970.129-0.0781.516-0.511-0.092-0.598-0.914-0.329
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ayx_*_3631ayx   -376389LAYDAKSASNDITIHHHHHHHHT--EEEaaaaaaaalxxbbb
1b7y_B_6061b7y   B613626LEALFARLGLAFRVHHHHHHHHT---EEaaaaaaaavbxbbb
1byf_A_361byf   A4255ILAFTEVKGHDYWVHHHHHHHHT--EEEaaaaaaaavbxbxb
1cfz_A_1381cfz   A145158VLAALRESGVEAIPHHHHHHTTT---EEaaaaaaaavbbxbp
1edq_A_3311edq   A346359LDQLSVETGRKYELHHHHHHHHT---EEaaaaaaaavxxbbb
1efv_A_1141efv   A120133LPRVAAKLEVAPISHHHHHHHHT---EEaaaaaaaavbxxbb
1gxs_B_3381gxs   B340353VYRELIQAGLRVWVHHHHHHHTT---EEaaaaaaaavxxbbb
1k3y_A_171k3y   A1932TRWLLAAAGVEFEEHHHHHHHHT---EEaaaaaaaavxxbbb
1kp8_A_2821kp8   A289302LQDIATLTGGTVISHHHHHHHHT---EEaaaaaaaavbbxbb
1l8r_A_2261l8r   A229242VYTKLKRLEITPVVHHHHHHHTT---EEaaaaaaaavbbxxx
1ny1_A_811ny1   A8497VLDVLKKHRVTGTFHHHHHHHTT---EEaaaaaaaalbxbbb
1rj9_A_2661rj9   A266279LIPIVRTLKVPIKFHHHHHHHH---EEEaaaaaaaalxxxab
1tml_*_471tml   -5770LMSAAQAAGKIPILHHHHHHHHT-B-EEaaaaaaaavbbxbb
1vjf_A_41vjf   A720LFAFFDAHGVDHKTHHHHHHHHT---EEaaaaaaaavxxbbb
6mht_A_1316mht   A136149VKNTMNELDYSFHAHHHHHHHTTB--EEaaaaaaaavbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ayx_*_3631ayx   *     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL L - 364
1byf_A_361byf   A     ZNZINC ION S - 36
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED S - 36
1byf_A_361byf   A     ZNZINC ION T - 37
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED T - 37
1byf_A_361byf   A     ZNZINC ION M - 38
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED M - 38
1byf_A_361byf   A     ZNZINC ION K - 49
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED K - 49
1byf_A_361byf   A     ZNZINC ION D - 52
1byf_A_361byf   A     ACTACETATE ION D - 52
1k3y_A_171k3y   A     GOLGLYCEROL S - 18
1ny1_A_811ny1   A     MSESELENOMETHIONINE T - 81
1ny1_A_811ny1   A     MSESELENOMETHIONINE L - 85
1ny1_A_811ny1   A     MSESELENOMETHIONINE F - 97
1ny1_A_811ny1   A     MSESELENOMETHIONINE V - 99
1rj9_A_2661rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER V - 280
1rj9_A_2661rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER G - 281
1vjf_A_41vjf   A     MSESELENOMETHIONINE D - 6
1vjf_A_41vjf   A     MSESELENOMETHIONINE K - 19
1vjf_A_41vjf   A     MSESELENOMETHIONINE T - 20
1vjf_A_41vjf   A     MSESELENOMETHIONINE L - 21

Clusters included in this Subclass
CLUSTER: HE.3.93
CLUSTER: HE.4.76
CLUSTER: HE.5.85