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Information on SUBCLASS 3.2.5
Subclass Accession number: 5462
Subclass: 3.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 14.5 +/- 14.6
Average RMSD (Å) : 0.786 +/- 0.238

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXcXphX
(φψ)-conformation: aalbpbb
Pattern: [aeknqr][dehkqry][afily][acily][adeknqrs][adkrst]x[GKN]x[dehknpqt][acgipvy]x
Conservation:0.040-0.1300.4320.3600.090-0.388-0.4622.797-1.220-0.150-0.582-0.787
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dys_A_601dys   A6980ARAAKARGENPIHHHHHHTT--EEaaaaaaavxbxb
1e5k_A_581e5k   A5869QEIYQASGLKVIHHHHHTTS--EEaaaaaaavxxbb
1gml_A_2981gml   A301312QHYLMRANVTAIHHHHHHTT-EEEaaaaaaavbxbb
1gtz_A_331gtz   A4152VKAAAAHGGTVDHHHHHTTT--EEaaaaaaavbbbb
1i58_A_3651i58   A370381RDLAKKMNKEVNHHHHHHTT--EEaaaaaaalbbbx
1jg1_A_1041jg1   A107118ALISEIVKTDVYHHHHHHH-S-EEaaaaaaavbpbb
1js1_X_1251js1   X128139NQFIQHSGRPVFHHHHHHSSS-EEaaaaaaavbwbb
1jwq_A_1021jwq   A110121KYFAPATGLTDRHHHHHHH-S-EEaaaaaaavxpxa
1mo9_A_4041mo9   A404415EEEARAAGHEIVHHHHHHTT--EEaaaaaaavxxbb
1o63_A_1101o63   A114125QRYCESKGWHCRHHHHHHHT--EEaaaaaaavxxbb
1pgx_*_361pgx   -4455KQYANDNGVDGVHHHHHHTT--EEaaaaaaavbbbb
1pq4_A_2471pq4   A247258AYFARDYNLVQIHHHHHHTT-EEEaaaaaaalbbxb
1tht_A_521tht   A5566AEYLSTNGFHVFHHHHHTTT--EEaaaaaaagxxbb
1vgy_A_2661vgy   A274285HAILDKHGVQYDHHHHHHTT--EEaaaaaaavxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jg1_A_1041jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE W - 104
1jg1_A_1041jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 105
1jg1_A_1041jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 106
1jg1_A_1041jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 120
1jg1_A_1041jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 121
1o63_A_1101o63   A     MSESELENOMETHIONINE V - 112

Clusters included in this Subclass
CLUSTER: HE.4.48