Information on SUBCLASS 3.2.5 |
Subclass Accession number: 5462
Subclass: 3.2.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 14.5 +/- 14.6 Average RMSD (Å) : 0.786 +/- 0.238 Consensus geometry
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Consensus Sequence: | XXcXphX |
(φψ)-conformation: | aalbpbb |
Pattern: | [aeknqr] | [dehkqry] | [afily] | [acily] | [adeknqrs] | [adkrst] | x | [GKN] | x | [dehknpqt] | [acgipvy] | x |
Conservation: | 0.040 | -0.130 | 0.432 | 0.360 | 0.090 | -0.388 | -0.462 | 2.797 | -1.220 | -0.150 | -0.582 | -0.787 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dys_A_60 | 1dys | A | 69 | 80 | ARAAKARGENPI | HHHHHHTT--EE | aaaaaaavxbxb |
1e5k_A_58 | 1e5k | A | 58 | 69 | QEIYQASGLKVI | HHHHHTTS--EE | aaaaaaavxxbb |
1gml_A_298 | 1gml | A | 301 | 312 | QHYLMRANVTAI | HHHHHHTT-EEE | aaaaaaavbxbb |
1gtz_A_33 | 1gtz | A | 41 | 52 | VKAAAAHGGTVD | HHHHHTTT--EE | aaaaaaavbbbb |
1i58_A_365 | 1i58 | A | 370 | 381 | RDLAKKMNKEVN | HHHHHHTT--EE | aaaaaaalbbbx |
1jg1_A_104 | 1jg1 | A | 107 | 118 | ALISEIVKTDVY | HHHHHHH-S-EE | aaaaaaavbpbb |
1js1_X_125 | 1js1 | X | 128 | 139 | NQFIQHSGRPVF | HHHHHHSSS-EE | aaaaaaavbwbb |
1jwq_A_102 | 1jwq | A | 110 | 121 | KYFAPATGLTDR | HHHHHHH-S-EE | aaaaaaavxpxa |
1mo9_A_404 | 1mo9 | A | 404 | 415 | EEEARAAGHEIV | HHHHHHTT--EE | aaaaaaavxxbb |
1o63_A_110 | 1o63 | A | 114 | 125 | QRYCESKGWHCR | HHHHHHHT--EE | aaaaaaavxxbb |
1pgx_*_36 | 1pgx | - | 44 | 55 | KQYANDNGVDGV | HHHHHHTT--EE | aaaaaaavbbbb |
1pq4_A_247 | 1pq4 | A | 247 | 258 | AYFARDYNLVQI | HHHHHHTT-EEE | aaaaaaalbbxb |
1tht_A_52 | 1tht | A | 55 | 66 | AEYLSTNGFHVF | HHHHHTTT--EE | aaaaaaagxxbb |
1vgy_A_266 | 1vgy | A | 274 | 285 | HAILDKHGVQYD | HHHHHHTT--EE | aaaaaaavxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jg1_A_104 | 1jg1 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | W - 104 |
1jg1_A_104 | 1jg1 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | N - 105 |
1jg1_A_104 | 1jg1 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | A - 106 |
1jg1_A_104 | 1jg1 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | I - 120 |
1jg1_A_104 | 1jg1 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | E - 121 |
1o63_A_110 | 1o63 | A | MSESELENOMETHIONINE | V - 112 |
Clusters included in this Subclass |
CLUSTER: HE.4.48 |