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Information on SUBCLASS 3.2.17
Subclass Accession number: 5474
Subclass: 3.2.17 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.1 +/- 12.4
Average RMSD (Å) : 0.567 +/- 0.153

Consensus geometry
d (Å): 11 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXhXXh
(φψ)-conformation: aalbpbb
Pattern: [AR][ALV][AEK]x[TVY][ADG][LV][NP]x[IV][AGP]
Conservation:0.202-0.384-0.384-0.865-0.625-0.6251.0231.261-1.1052.006-0.504
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1iir_A_401iir   A4252RLAEVGVPHVPHHHHTT--EEEaaaaavbpbbx
1k7k_A_461k7k   A5767AAKVTALPAIAHHHHHSS-EEEaaaaavbxbbb
1kpg_A_821kpg   A8292AVEKYDVNVVGHHHHH---EEEaaaaalbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k7k_A_461k7k   A     MSESELENOMETHIONINE V - 74
1kpg_A_821kpg   A     MSESELENOMETHIONINE A - 82
1kpg_A_821kpg   A     MSESELENOMETHIONINE V - 83
1kpg_A_821kpg   A     MSESELENOMETHIONINE E - 84
1kpg_A_821kpg   A     MSESELENOMETHIONINE K - 85
1kpg_A_821kpg   A     MSESELENOMETHIONINE D - 87
1kpg_A_821kpg   A     MSESELENOMETHIONINE V - 88
1kpg_A_821kpg   A     MSESELENOMETHIONINE N - 89
1kpg_A_821kpg   A     MSESELENOMETHIONINE V - 90
1kpg_A_821kpg   A     MSESELENOMETHIONINE V - 91
1kpg_A_821kpg   A     MSESELENOMETHIONINE G - 92
1kpg_A_821kpg   A     MSESELENOMETHIONINE L - 93
1kpg_A_821kpg   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 93
1kpg_A_821kpg   A     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 94

Clusters included in this Subclass
CLUSTER: HE.3.243