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PDB code:

Information on SUBCLASS 3.3.3

Subclass Accession number: 5478 Subclass: 3.3.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 26 Average sequence ID (%) : 14.0 +/- 15.3 Average RMSD (Å) : 0.762 +/- 0.217 Consensus geometry d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a2o_A_38	1a2o	A	41	54	ARDLIKKFNPDVLT	HHHHHHHH--SEEE	aaaaaaaalxabbb
1doz_A_235	1doz	A	239	252	TRDLFEQKGYQAFV	HHHHHHHH--SEEE	aaaaaaaavpabbb
1dp4_A_64	1dp4	A	69	82	AVDLKWEHSPAVFL	HHHHHHHH--SEEE	aaaaaaaalxabbb
1dz3_A_37	1dz3	A	40	53	CLQMLEEKRPDILL	HHHHHHHH--SEEE	aaaaaaaalxabbx
1g71_A_56	1g71	A	59	72	LEDYIRATSPYAVY	HHHHHHHH--SEEE	aaaaaaaalwabbb
1h0c_A_136	1h0c	A	139	152	VEEGLAQHKPVLLF	HHHHHHHH--SEEE	aaaaaaaalxabbb
1hp1_A_192	1hp1	A	200	213	IQELQQTEKPDIII	HHHHHHHT--SEEE	aaaaaaaalxabbb
1j0h_A_303	1j0h	A	313	326	ATYWIREFDIDGWR	HHHHHHHH---EEE	aaaaaaaavxabbx
1jye_A_163	1jye	A	170	183	GVEHLVALGHQQIA	HHHHHHHHT--SEE	aaaaaaaagxabbb
1jys_A_52	1jys	A	59	72	ATLLLEHCKPDVII	HHHHHHHH--SEEE	aaaaaaaalxabbb
1k9s_A_66	1k9s	A	73	86	TKELITDFGVKKII	HHHHHHHH---EEE	aaaaaaaavxabbb
1leh_A_3	1leh	A	3	16	IFKYMEKYDYEQLV	HHHHHHHHT--EEE	aaaaaaaalxabbb
1meo_A_120	1meo	A	120	133	AHEQALETGVTVTG	HHHHHHHHT-SEEE	aaaaaaaavxabbe
1mvo_A_35	1mvo	A	38	51	ALKKAETEKPDLIV	HHHHHHHH--SEEE	aaaaaaaalxabbb
1nat_*_36	1nat	-	39	52	ALDIVTKERPDLVL	HHHHHHHH--SEEE	aaaaaaaalxabbb
1nnl_A_157	1nnl	A	162	175	IKLLKEKFHFKKII	HHHHHHHH--S-EE	aaaaaaaalpabbb
1nul_A_40	1nul	A	43	56	GALLARELGIRHVD	HHHHHHHHT---EE	aaaaaaaavxaxbb
1nv8_A_106	1nv8	A	113	126	ALELIRKYGIKTVA	HHHHHHHHT--EEE	aaaaaaaavxabbb
1pzx_A_239	1pzx	A	246	259	KQMIEETHGCTRFF	HHHHHHHT---EEE	aaaaaaaavxabbb
1qas_A_326	1qas	A	328	341	AYIRALCKGCRCLE	HHHHHHHTT--EEE	aaaaaaaavpabbb
1r5y_A_265	1r5y	A	267	280	DIVGAVERGIDMFD	HHHHHHTTT--EEE	gaaaaaaagxabbb
1rj9_A_235	1rj9	A	240	253	AKKFHEAVGLTGVI	HHHHHHHH--SEEE	aaaaaaaavxabbb
1rj9_B_196	1rj9	B	202	215	LARLKEVLGPDEVL	HHHHHHHH--SEEE	aaaaaaaavxabbb
1usl_A_93	1usl	A	96	109	AALAREHNNAQLIG	HHHHHHHH--SEEE	aaaaaaaalxabbx
1vhw_A_67	1vhw	A	74	87	VTELIKDYGVKKII	HHHHHHHH---EEE	aaaaaaaavxabbb
2dnj_A_140	2dnj	A	151	164	YLDVQQKWHLNDVM	HHHHHHHH----EE	aaaaaaaalbaxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1doz_A_235	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 236
1h0c_A_136	1h0c	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 154
1hp1_A_192	1hp1	A	ZNZINC ION	H - 217
1hp1_A_192	1hp1	A	CO3CARBONATE ION	H - 217
1jys_A_52	1jys	A	ADEADENINE	S - 76
1jys_A_52	1jys	A	ADEADENINE	A - 77
1jys_A_52	1jys	A	ADEADENINE	G - 78
1k9s_A_66	1k9s	A	FM12-HYDROXYMETHYL-5-(7-METHYLAMINO-3H-PYRAZOLO[4,3-D] PYRIMIDIN-3-YL)-TETRAHYDRO-FURAN-3,4-DIOL	I - 71
1k9s_A_66	1k9s	A	PO4PHOSPHATE ION	R - 87
1k9s_A_66	1k9s	A	FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL	R - 87
1k9s_A_66	1k9s	A	PO4PHOSPHATE ION	V - 88
1k9s_A_66	1k9s	A	PO4PHOSPHATE ION	G - 89
1k9s_A_66	1k9s	A	FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL	G - 89
1k9s_A_66	1k9s	A	PO4PHOSPHATE ION	S - 90
1k9s_A_66	1k9s	A	FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL	S - 90
1k9s_A_66	1k9s	A	PO4PHOSPHATE ION	C - 91
1k9s_A_66	1k9s	A	FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL	C - 91
1k9s_A_66	1k9s	A	FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL	G - 92
1k9s_A_66	1k9s	A	FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL	A - 93
1mvo_A_35	1mvo	A	MNMANGANESE (II) ION	D - 53
1nnl_A_157	1nnl	A	CACALCIUM ION	K - 158
1nnl_A_157	1nnl	A	CACALCIUM ION	G - 178
1nv8_A_106	1nv8	A	SAMS-ADENOSYLMETHIONINE	T - 106
1nv8_A_106	1nv8	A	SAMS-ADENOSYLMETHIONINE	D - 127
1nv8_A_106	1nv8	A	SAMS-ADENOSYLMETHIONINE	I - 128
1r5y_A_265	1r5y	A	DQU2,6-DIAMINO-3H-QUINAZOLIN-4-ONE	D - 280
1rj9_B_196	1rj9	B	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	V - 217
1rj9_A_235	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	V - 254
1rj9_A_235	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	T - 255
1usl_A_93	1usl	A	PO4PHOSPHATE ION	H - 102
1vhw_A_67	1vhw	A	ADNADENOSINE	I - 72
1vhw_A_67	1vhw	A	ADNADENOSINE	R - 88
1vhw_A_67	1vhw	A	ADNADENOSINE	G - 90
1vhw_A_67	1vhw	A	ADNADENOSINE	S - 91
1vhw_A_67	1vhw	A	ADNADENOSINE	C - 92
1vhw_A_67	1vhw	A	ADNADENOSINE	G - 93
1vhw_A_67	1vhw	A	ADNADENOSINE	A - 94

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1a2o_A_38	1a2o	A	PONPHOSPHORYLATION SITE	D - 56

Clusters included in this Subclass

CLUSTER: HE.3.27

CLUSTER: HE.4.224

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