Information on SUBCLASS 3.3.6 |
Subclass Accession number: 5481
Subclass: 3.3.6 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 13 Average sequence ID (%) : 15.5 +/- 21.1 Average RMSD (Å) : 0.777 +/- 0.220 Consensus geometry
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Consensus Sequence: | XXphpXh |
(φψ)-conformation: | aalpabb |
Pattern: | [dehy] | [almwy] | [ACFILVY] | x | x | x | [ADEKNRS] | [LPV] | [cdeknsty] | x | [AILV] | [filvy] | [giltv] |
Conservation: | 0.158 | -0.749 | 0.095 | -1.053 | -0.799 | -0.125 | 0.473 | 1.383 | -0.621 | -1.245 | 2.357 | 0.119 | 0.008 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a04_A_41 | 1a04 | A | 46 | 58 | ELAESLDPDLILL | HHHHHH--SEEEE | aaaaaalxabbxb |
1b5t_A_35 | 1b5t | A | 46 | 58 | DRLSSLKPKFVSV | HHHHTT--SEEEE | aaaaaalxabbbb |
1ddz_A_182 | 1ddz | A | 190 | 202 | YAVQYLKVKHILV | HHHHTS--SEEEE | aaaaaalxabbbb |
1ddz_A_436 | 1ddz | A | 444 | 456 | YAVQYLKVKRVVV | HHHHTS--SEEEE | aaaaaalxabbbb |
1ekj_A_197 | 1ekj | A | 205 | 217 | YAVLHLKVSNIVV | HHHHTS--SEEEE | aaaaaavpabbbb |
1g71_A_56 | 1g71 | A | 61 | 73 | DYIRATSPYAVYS | HHHHHH--SEEEE | aaaaaalwabbbb |
1i6p_A_75 | 1i6p | A | 83 | 95 | YAVDVLEVEHIII | HHHHTS--SEEEE | aaaaaalxabbbb |
1jj7_A_645 | 1jj7 | A | 654 | 666 | ARALIRKPCVLIL | HHHHTT--SEEEE | aaaaaalxabbbb |
1jlj_A_63 | 1jlj | A | 72 | 84 | DWCDEKELNLILT | HHHHTS--SEEEE | aaaaaalxabbbx |
1pq4_A_269 | 1pq4 | A | 277 | 289 | DTAKENNLTMVFG | HHHHTTT--EEEE | aaaaaalxabbbb |
1tc1_A_118 | 1tc1 | A | 125 | 137 | HMYFTRRPASLKT | HHHHTT--SEEEE | aaaaaalxabbbb |
1v33_A_56 | 1v33 | A | 61 | 73 | DYIRATAPYAVYS | HHHHHH--SEEEE | aaaaaalwabbbb |
2dpm_A_48 | 2dpm | A | 48 | 60 | ALFFDLAPKDAVI | HHHHHH--SEEEE | aaaaaalxabbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b5t_A_35 | 1b5t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | V - 58 |
1ddz_A_182 | 1ddz | A | ZNZINC ION | H - 205 |
1ddz_A_436 | 1ddz | A | ZNZINC ION | H - 459 |
1ekj_A_197 | 1ekj | A | ACTACETATE ION | Y - 205 |
1ekj_A_197 | 1ekj | A | ACTACETATE ION | L - 210 |
1ekj_A_197 | 1ekj | A | ACTACETATE ION | H - 220 |
1ekj_A_197 | 1ekj | A | ZNZINC ION | H - 220 |
1i6p_A_75 | 1i6p | A | ZNZINC ION | H - 98 |
1jj7_A_645 | 1jj7 | A | MGMAGNESIUM ION | D - 667 |
1jj7_A_645 | 1jj7 | A | ADPADENOSINE-5'-DIPHOSPHATE | D - 667 |
1tc1_A_118 | 1tc1 | A | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | L - 118 |
1tc1_A_118 | 1tc1 | A | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | T - 119 |
1tc1_A_118 | 1tc1 | A | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | L - 120 |
1tc1_A_118 | 1tc1 | A | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | N - 121 |
1tc1_A_118 | 1tc1 | A | FMBFORMYCIN B | L - 141 |
1v33_A_56 | 1v33 | A | PO4PHOSPHATE ION | Y - 72 |
2dpm_A_48 | 2dpm | A | SAMS-ADENOSYLMETHIONINE | A - 48 |
2dpm_A_48 | 2dpm | A | SAMS-ADENOSYLMETHIONINE | L - 49 |
2dpm_A_48 | 2dpm | A | SAMS-ADENOSYLMETHIONINE | N - 61 |
2dpm_A_48 | 2dpm | A | SAMS-ADENOSYLMETHIONINE | D - 62 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1a04_A_41 | 1a04 | A | 1PHOSPHORYLATION SITE. | D - 59 |
Clusters included in this Subclass |
CLUSTER: HE.4.87 |
CLUSTER: HE.6.40 |