Logo
Information on SUBCLASS 3.3.6
Subclass Accession number: 5481
Subclass: 3.3.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 15.5 +/- 21.1
Average RMSD (Å) : 0.777 +/- 0.220

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXphpXh
(φψ)-conformation: aalpabb
Pattern: [dehy][almwy][ACFILVY]xxx[ADEKNRS][LPV][cdeknsty]x[AILV][filvy][giltv]
Conservation:0.158-0.7490.095-1.053-0.799-0.1250.4731.383-0.621-1.2452.3570.1190.008
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_411a04   A4658ELAESLDPDLILLHHHHHH--SEEEEaaaaaalxabbxb
1b5t_A_351b5t   A4658DRLSSLKPKFVSVHHHHTT--SEEEEaaaaaalxabbbb
1ddz_A_1821ddz   A190202YAVQYLKVKHILVHHHHTS--SEEEEaaaaaalxabbbb
1ddz_A_4361ddz   A444456YAVQYLKVKRVVVHHHHTS--SEEEEaaaaaalxabbbb
1ekj_A_1971ekj   A205217YAVLHLKVSNIVVHHHHTS--SEEEEaaaaaavpabbbb
1g71_A_561g71   A6173DYIRATSPYAVYSHHHHHH--SEEEEaaaaaalwabbbb
1i6p_A_751i6p   A8395YAVDVLEVEHIIIHHHHTS--SEEEEaaaaaalxabbbb
1jj7_A_6451jj7   A654666ARALIRKPCVLILHHHHTT--SEEEEaaaaaalxabbbb
1jlj_A_631jlj   A7284DWCDEKELNLILTHHHHTS--SEEEEaaaaaalxabbbx
1pq4_A_2691pq4   A277289DTAKENNLTMVFGHHHHTTT--EEEEaaaaaalxabbbb
1tc1_A_1181tc1   A125137HMYFTRRPASLKTHHHHTT--SEEEEaaaaaalxabbbb
1v33_A_561v33   A6173DYIRATAPYAVYSHHHHHH--SEEEEaaaaaalwabbbb
2dpm_A_482dpm   A4860ALFFDLAPKDAVIHHHHHH--SEEEEaaaaaalxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b5t_A_351b5t   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 58
1ddz_A_1821ddz   A     ZNZINC ION H - 205
1ddz_A_4361ddz   A     ZNZINC ION H - 459
1ekj_A_1971ekj   A     ACTACETATE ION Y - 205
1ekj_A_1971ekj   A     ACTACETATE ION L - 210
1ekj_A_1971ekj   A     ACTACETATE ION H - 220
1ekj_A_1971ekj   A     ZNZINC ION H - 220
1i6p_A_751i6p   A     ZNZINC ION H - 98
1jj7_A_6451jj7   A     MGMAGNESIUM ION D - 667
1jj7_A_6451jj7   A     ADPADENOSINE-5'-DIPHOSPHATE D - 667
1tc1_A_1181tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID L - 118
1tc1_A_1181tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID T - 119
1tc1_A_1181tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID L - 120
1tc1_A_1181tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 121
1tc1_A_1181tc1   A     FMBFORMYCIN B L - 141
1v33_A_561v33   A     PO4PHOSPHATE ION Y - 72
2dpm_A_482dpm   A     SAMS-ADENOSYLMETHIONINE A - 48
2dpm_A_482dpm   A     SAMS-ADENOSYLMETHIONINE L - 49
2dpm_A_482dpm   A     SAMS-ADENOSYLMETHIONINE N - 61
2dpm_A_482dpm   A     SAMS-ADENOSYLMETHIONINE D - 62
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a04_A_411a04   A 1PHOSPHORYLATION SITE.D - 59

Clusters included in this Subclass
CLUSTER: HE.4.87
CLUSTER: HE.6.40