Information on SUBCLASS 3.4.3 |
Subclass Accession number: 5489
Subclass: 3.4.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 13.6 +/- 17.4 Average RMSD (Å) : 0.771 +/- 0.243 Consensus geometry
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Consensus Sequence: | pXXXpXX |
(φψ)-conformation: | aabaabp |
Pattern: | [ailvy] | x | [adegkt] | x | x | [adekrs] | x | x | [EKPT] | [deknqt] | x | x | [fgiltv] | [filv] | x |
Conservation: | 0.380 | -0.675 | -0.803 | -0.070 | -0.730 | 0.036 | -0.187 | -0.705 | 3.021 | 0.891 | -0.469 | -0.591 | 0.053 | 0.692 | -0.845 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bfd_*_406 | 1bfd | - | 410 | 424 | AIGVQLAEPERQVIA | HHHHHHH-TTS-EEE | aaaaaaabaabxxbx |
1es9_A_110 | 1es9 | A | 121 | 135 | VQLVNERQPQARVVV | HHHHHHHSTT-EEEE | aaaaaaabaaxxbbb |
1ewq_A_15 | 1ewq | A | 20 | 34 | YVELRDQYPDYLLLF | HHHHHHH-TTSEEEE | aaaaaaabaabxxbx |
1fp1_D_222 | 1fp1 | D | 224 | 238 | LELIISKYPLIKGIN | HHHHHHH-TT-EEEE | aaaaaaabaaxxxbx |
1gk8_I_86 | 1gk8 | I | 93 | 107 | IVACTKAFPDAYVRL | HHHHHHH-TTSEEEE | aaaaaaabaaxxbbx |
1gpu_A_224 | 1gpu | A | 230 | 244 | AIAQAKLSKDKPTLI | HHHHHHH-TTS-EEE | aaaaaaaxaabxbbb |
1i36_A_92 | 1i36 | A | 95 | 109 | VRMASSLIEKGGFVD | HHHHHHH-SSSEEEE | aaaaaaaxaabxbbx |
1iib_A_64 | 1iib | A | 64 | 78 | LPEIQRLLPNKPVEV | HHHHHHH-TTS-EEE | aaaaaaabaabwbbx |
1itz_A_235 | 1itz | A | 241 | 255 | AIKEAKAVTDKPTLI | HHHHHHH--SS-EEE | aaaaaaaxaabxbbb |
1j6u_A_322 | 1j6u | A | 329 | 343 | LQTAKEVFENEKIVV | HHHHHHH-SSSEEEE | aaaaaaabaaxxbbb |
1kyz_A_213 | 1kyz | A | 215 | 229 | INTIVSKYPTIKGIN | HHHHHHH-TTSEEEE | aaaaaaabaaxxxbx |
1ozh_A_425 | 1ozh | A | 429 | 443 | AIGAWLVNPERKVVS | HHHHHHHSTTSEEEE | aaaaaaabaabxbbb |
1qgd_A_221 | 1qgd | A | 227 | 241 | AVEEARAVTDKPSLL | HHHHHHH--SS-EEE | aaaaaaaxaabxbbx |
1qgo_A_15 | 1qgo | A | 26 | 40 | ERDLAASCPDRDLFR | HHHHHHT-TTSEEEE | aaaaaaabaabxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bfd_*_406 | 1bfd | * | TPPTHIAMINE DIPHOSPHATE | I - 426 |
1bfd_*_406 | 1bfd | * | CACALCIUM ION | G - 427 |
1bfd_*_406 | 1bfd | * | TPPTHIAMINE DIPHOSPHATE | G - 427 |
1ewq_A_15 | 1ewq | A | MSESELENOMETHIONINE | V - 21 |
1ewq_A_15 | 1ewq | A | MSESELENOMETHIONINE | R - 24 |
1ewq_A_15 | 1ewq | A | MSESELENOMETHIONINE | D - 25 |
1fp1_D_222 | 1fp1 | D | SAHS-ADENOSYL-L-HOMOCYSTEINE | N - 223 |
1fp1_D_222 | 1fp1 | D | HCC2',4,4'-TRIHYDROXYCHALCONE | N - 223 |
1fp1_D_222 | 1fp1 | D | SAHS-ADENOSYL-L-HOMOCYSTEINE | F - 239 |
1fp1_D_222 | 1fp1 | D | SAHS-ADENOSYL-L-HOMOCYSTEINE | D - 240 |
1i36_A_92 | 1i36 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | I - 112 |
1kyz_A_213 | 1kyz | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | V - 214 |
1kyz_A_213 | 1kyz | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | F - 230 |
1kyz_A_213 | 1kyz | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | D - 231 |
1ozh_A_425 | 1ozh | A | HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE | S - 445 |
1ozh_A_425 | 1ozh | A | MGMAGNESIUM ION | G - 446 |
1ozh_A_425 | 1ozh | A | HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE | G - 446 |
Clusters included in this Subclass |
CLUSTER: HE.3.188 |
CLUSTER: HE.4.116 |
CLUSTER: HE.4.219 |
CLUSTER: HE.5.106 |
CLUSTER: HE.5.142 |
CLUSTER: HE.6.93 |